Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61930 501 / 2e-177 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 305 / 5e-100 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 290 / 6e-94 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 164 / 6e-47 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183900 [exp] 301 / 4e-98 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 300 / 7e-98 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 296 / 1e-96 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 173 / 2e-50 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004105 [exp] 479 / 4e-169 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 486 / 1e-165 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10005547 [exp] 315 / 2e-104 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 311 / 9e-103 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 296 / 2e-96 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 291 / 9e-95 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 290 / 8e-94 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 172 / 6e-50 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10041934 [exp] 156 / 3e-46 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10027182 [exp] 107 / 3e-26 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [poplar] [flax] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.015G106200.5 pacid=42775279 polypeptide=Potri.015G106200.5.p locus=Potri.015G106200 ID=Potri.015G106200.5.v4.1 annot-version=v4.1 ATGAACATAATACTAAAACCCCAGCACCTGCTCTCAAAAAAACCAAACCTAACCCATTTTTTCTCATCAAAAACACCCATTCCCTTACCCTATGGGACAG AAACAAATGACCCATCATACAAAGACGTACCAAAACCTGTTAGAGACAAGTCAGAAAGAAAACCATATGTAACACCTATGAAAATGCTCATTAAAAGAGC TAAAGAAGAAAAGGAAGCAAGAAAGTTACAACCTTGTAGAATGTTGGAGAATCCACCTGATAATGGTTTGTTAGTCCCTCAACTTGTGCCTGTTGCTTAC CAAGTTTATGAAGCCCGTGAAGTTTTGCTTTCTGGGATTTCTAAGCTTGTTAAAGTTATTCCTGTTCAGAAGTGCAGGTTCTGCCATGAGTTACATATTG GCCACGTGGGCCATGAAATTCGAACCTGCACTGGTCCTGGAAGTGGAATGAGGAGTTCCACTCATGTTTGGAGAAAGGGGAGAGTGCATGATGTGGTTTT TTCCCCCAAATCCTATCATCTGTATGATCGTGTTGGCAAGCCAAGAGTTGTGCATGACGAGAGTCGCAGGGTCCCTCGTATCCCTGCCATTGTAGAGCTC TGTATACAGGCTGGTGTCGACCTTGAAAAGCACCCTACAAAGAGGAGGACAAAACCCGTGTACTCTATTGAAGGAAGAATCGTAGACTTTGAGCAAGCGA AGGAAAATGATGAAAATGAGCGTAATTTGCATGATGAGAACCTTGATCCTCTGATGGGTTCTGATCTTGGGACCAAATTTGATGAAGCAAGAAATTTTAT ACTGGATAAAGAAACTGATCAATTGGAAGAATCACTTGAGGGAGTGACTGATTTAAGGGAAATAAGCATTGGGACCATGGAGTCATGGTTCAAAATGATA TCTGGGGCAAAGAAGATTATGGAAAAGTATGGTGTGTTAACCTGCGGATATTGTCCTGAAGTTCAGGTAGGCCCTAAGGGACACAAGGTGAGGATGTGCA AGGCAACAAAGCATCAGCATCGTGATGGTCTGCATGCATGGCAAGAAGCAACTATTGATGATCTTGTGGCTCCCAATTATGTTTGGCATGTTCGAGATAC GAATGGGCTTCCTCTGGATAACAAGTTGAAGAGGTACTATGGCAAGGCTCCAGCTGTAGTGGAGCTGTGTGTGCAGGCTGGTGCACCTGTTCCAGATCAA TATCGAAGTATGATGAGACTAGATGTGGTTCCTCCTGACCGTGATGAAGTTGATCTTGTTGCTTGA
AA sequence Show only first row Show all	>Potri.015G106200.5 pacid=42775279 polypeptide=Potri.015G106200.5.p locus=Potri.015G106200 ID=Potri.015G106200.5.v4.1 annot-version=v4.1 MNIILKPQHLLSKKPNLTHFFSSKTPIPLPYGTETNDPSYKDVPKPVRDKSERKPYVTPMKMLIKRAKEEKEARKLQPCRMLENPPDNGLLVPQLVPVAY QVYEAREVLLSGISKLVKVIPVQKCRFCHELHIGHVGHEIRTCTGPGSGMRSSTHVWRKGRVHDVVFSPKSYHLYDRVGKPRVVHDESRRVPRIPAIVEL CIQAGVDLEKHPTKRRTKPVYSIEGRIVDFEQAKENDENERNLHDENLDPLMGSDLGTKFDEARNFILDKETDQLEESLEGVTDLREISIGTMESWFKMI SGAKKIMEKYGVLTCGYCPEVQVGPKGHKVRMCKATKHQHRDGLHAWQEATIDDLVAPNYVWHVRDTNGLPLDNKLKRYYGKAPAVVELCVQAGAPVPDQ YRSMMRLDVVPPDRDEVDLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.015G106200 [exp]	0	1
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.009G143000 [exp]	1.00	0.8326
AT2G17030			F-box family protein with a do...		Potri.002G014500 [exp]	2.44	0.8243
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	4.24	0.7880	NAC003,ATNAC2.1
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.005G190700 [exp]	6.48	0.7608
AT5G57230			Thioredoxin superfamily protei...		Potri.018G143500 [exp]	7.48	0.7746
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	11.95	0.7378
AT1G01840			unknown protein		Potri.014G077000 [exp]	22.13	0.7267
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	23.36	0.7015
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	25.98	0.7440
AT3G59310			Eukaryotic protein of unknown ...		Potri.002G230600 [exp]	26.70	0.6932

Compare expression of checked genes

Potri.015G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.