Plant FIBer expression Database

Potri.015G106300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50970 566 / 0 transducin family protein / WD-40 repeat family protein (.1)
AT5G19920 402 / 5e-133 Transducin/WD40 repeat-like superfamily protein (.1)
AT5G16750 44 / 0.0005 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G108100
[exp]
928 / 0 AT5G50970 598 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Potri.019G087200
[exp]
44 / 0.0002 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032536
[exp]
625 / 0 AT5G50970 601 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Lus10043205
[exp]
620 / 0 AT5G50970 603 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Lus10040464
[exp]
46 / 6e-05 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Lus10023579
[exp]
44 / 0.0003 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.015G106300.1 pacid=42775664 polypeptide=Potri.015G106300.1.p locus=Potri.015G106300 ID=Potri.015G106300.1.v4.1 annot-version=v4.1
ATGAGCAAACCATCTCCGATTCTTAAAAAGCCAAAAGTAGAGCAGCAAAACAACGACGACGATAATGAAGTGTCACTAAATCAAGAATGCAAAGAGAACA
ACGGCAGAGAAGAAGAAGAAGATAGCATGGAGGAGCAAAAAGTCGCTTTGATTGCTCTAATCGAACATCGTTCTCGTGTACTTCAGCATCTTAAGCAACG
CGTTTCTTATTATCAAACTCAGCTTGTTGAAGCAGAGAAGAGGTTAGAGGAATCGCAGGTGAAATTGGGTCGGTTAAGTGGAAAAGGCAATGCAACAGCG
CCTAATAAACCTTCTGTAGAGAATGGAATTAAGAATGTGAAGGTGGAGAGGAAATCTCCAAGTCCGGTTCGTGTAAATGAGGCTTCTCCTGGAAGCCAGC
CCCAGTCTAGGACTGAACTTGTGATTCCGAAAGTTCCTCAACCACTAAAATTGGTGGGTTCAGGTGCGAGAATTTCGAGTTGTTCTAGTGCTCAACCGAG
TTCTTCCACTCCCTCTAATGGTGTTGCGAATGCGAAAGTAGAAAAACTTAATAGTGTTGCGGATGTAAAAGTGGAAAAATCTAATAGTGATGTGAAGGTG
GAAAGGTCTCACAAAAGTTCGTCTCCTGATGTTGAAGTTATTGAAATTCAGGATAGAGGAACGAAAAGGAAGATTGAACAGAAAGAACACAAGGAATTGA
TTCCACTGGTGTCTAGGAGCTCTTCTCCCTGCACAGTCCACTGCCATACAAGTAATCATATCCCTAGTCAGCACAAAAGAAAGTTGAGAAGTGTTGCTGT
TTGTCCAGCCAATGATCAGCTTTTTGTGTCCAGTGCTTTGGATGGAATGGTCCACCTATGGCAACTTCAAGCTCGAGGGTCAGGTGCCTCTATAATTAGC
ACCACTGATTGCGTGTCTCCATTGCAACGTCGATGGCCAGAAGATATAGCCTGGCACCCACTGGGAAATAGCTTATTTTCTGCGTACACTGCAGATAGTG
GGGATTCTCAGATATCAATTCTGAATTTGAATAAAATGCAAGGGAGAGCACGTGTAACTTTCTTGGATGACAAGCCTCATATTAAGGGTACTATTAACAG
CATAGAGTTCATGCCCTGGGAAAATACCTGTTTTGTTACTGGCTGCAGTGATCATGGTGTTGTTCTTTGGAATGAGAAAGATGATGAGAACTTGTGGAAG
CCAAAGATATTGCACAGGAATTTGCATTCTTCTGCTGTCATGGGGGTTGCCGGGATGCAGCAAAAGCAGATTGTACTGTCTGCTGGCGCAGACAAGAGAA
TTGTTGGGTTTGATGTGCAAGTTGGGAGAGCTGACTTCAAGCATCAACTCGACAGCAAGTGCATGAGTGTTCTGCCAAATCCATGTGATTTCAATTTATT
CATGGTTCAAACAGGGACTCATGGGAAGCAACTTAGGCTGTTTGATAACAGACTGAAGCAAATGGAAATTCATTCTTTTGGGTTTAAACAAGAAAGTAGC
GACTCTCAGTCAGCTCTGACCAATCAAGCTTGGTCTCCTGATGGCCTGTACCTCACATCTGGTTCAGTAGACCCTGTGATCCATATCTTTGATATCAGGT
ATAATTATGACAAGCCATCCCAGTCCATAAAAGCTCACCAGAAACGAGTCTTTAAAGCAGTATGGCATTACTCTCTCCCACTTCTGATTTCCATATCTTC
TGATCTGCACATCGGGTTACACAAGATCATCTAG
AA sequence
>Potri.015G106300.1 pacid=42775664 polypeptide=Potri.015G106300.1.p locus=Potri.015G106300 ID=Potri.015G106300.1.v4.1 annot-version=v4.1
MSKPSPILKKPKVEQQNNDDDNEVSLNQECKENNGREEEEDSMEEQKVALIALIEHRSRVLQHLKQRVSYYQTQLVEAEKRLEESQVKLGRLSGKGNATA
PNKPSVENGIKNVKVERKSPSPVRVNEASPGSQPQSRTELVIPKVPQPLKLVGSGARISSCSSAQPSSSTPSNGVANAKVEKLNSVADVKVEKSNSDVKV
ERSHKSSSPDVEVIEIQDRGTKRKIEQKEHKELIPLVSRSSSPCTVHCHTSNHIPSQHKRKLRSVAVCPANDQLFVSSALDGMVHLWQLQARGSGASIIS
TTDCVSPLQRRWPEDIAWHPLGNSLFSAYTADSGDSQISILNLNKMQGRARVTFLDDKPHIKGTINSIEFMPWENTCFVTGCSDHGVVLWNEKDDENLWK
PKILHRNLHSSAVMGVAGMQQKQIVLSAGADKRIVGFDVQVGRADFKHQLDSKCMSVLPNPCDFNLFMVQTGTHGKQLRLFDNRLKQMEIHSFGFKQESS
DSQSALTNQAWSPDGLYLTSGSVDPVIHIFDIRYNYDKPSQSIKAHQKRVFKAVWHYSLPLLISISSDLHIGLHKII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50970 transducin family protein / WD... Potri.015G106300
[exp]
0 1
AT2G20980 MCM10 minichromosome maintenance 10 ... Potri.009G134500
[exp]
4.47 0.9119
AT4G16970 Protein kinase superfamily pro... Potri.001G151900
[exp]
7.87 0.9037
AT2G41450 N-acetyltransferases;N-acetylt... Potri.006G045100
[exp]
8.66 0.9033
AT3G59550 ATSYN3, SYN3, A... SISTER CHROMATID COHESION 1 PR... Potri.001G225600
[exp]
10.19 0.9031 SYN3.1
AT3G27120 P-loop containing nucleoside t... Potri.001G331200
[exp]
10.72 0.9019
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.006G188700
[exp]
12.24 0.8990
AT1G61000 unknown protein Potri.007G116200
[exp]
12.64 0.8970
AT3G63480 ATP binding microtubule motor ... Potri.005G038900
[exp]
14.07 0.8960
AT1G07270 Cell division control, Cdc6 (.... Potri.001G250200
[exp]
17.54 0.8886
AT2G01120 ORC4, ATORC4 origin recognition complex sub... Potri.008G126300
[exp]
19.59 0.8871

Potri.015G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.