Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BON1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61910 796 / 0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT5G61900 794 / 0 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G07300 793 / 0 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G08860 663 / 0 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G67800 101 / 8e-23 Copine (Calcium-dependent phospholipid-binding protein) family AT5G14420 100 / 3e-22 RGLG2 RING domain ligase2 (.1.2.3.4) AT3G01650 97 / 5e-21 RGLG1 RING domain ligase1 (.1) AT1G79380 95 / 1e-20 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G63970 89 / 7e-19 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT5G04220 44 / 0.0002 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G108200 [exp] 996 / 0 AT5G61910 827 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.013G029100 [exp] 693 / 0 AT1G08860 857 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.003G055501 [exp] 123 / 8e-33 AT5G07300 95 / 3e-23 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.016G003000 [exp] 105 / 3e-24 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 101 / 9e-23 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.008G183600 [exp] 101 / 1e-22 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G081300 [exp] 100 / 1e-22 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.006G002600 [exp] 99 / 6e-22 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 98 / 2e-21 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043206 [exp] 705 / 0 AT5G61900 684 / 0.0 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) Lus10033826 [exp] 690 / 0 AT1G08860 880 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10032533 [exp] 390 / 7e-132 AT5G61910 387 / 6e-131 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10018973 [exp] 300 / 8e-97 AT1G08860 403 / 4e-137 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10014587 [exp] 108 / 3e-25 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 103 / 2e-23 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 100 / 2e-22 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 96 / 6e-21 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 94 / 4e-20 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 93 / 5e-20 AT3G01650 514 / 0.0 RING domain ligase1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0128 [poplar] [flax] vWA-like PF07002 [poplar] [flax] Copine Copine
Representative CDS sequence Show only first row Show all	>Potri.015G106400.1 pacid=42776291 polypeptide=Potri.015G106400.1.p locus=Potri.015G106400 ID=Potri.015G106400.1.v4.1 annot-version=v4.1 ATGGGGAATTGCTGCTCTGACGTGGCCGGCGGTAGGGCGGCAGTTGGTGGCAGCGGCGCCGCCGCTGGAAATGACGCTGTCGATCATTTCCTCAAGTCTC GTGGCATGTACAGCTCTCAGATGGAGTTATCATTTTCTGCTACAAACTTGCGTGACCGGGATGTACTTTCCAAGAGCGATCCTATATTGATTGGTTATAC GAAAGGAAAAGATGGAACACTTGCTGAAGTTTTCCGAACAGAAGTAGTTCTTAATTCATTAAATCCAACATGGATTACAAAACACGTGATTACATTCCAG TTTGAAGCTGTTCAAACGTTGGTGTTCCATGCATATGACGTTGACACTCAATTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCTACAATTTC TTGGCGAAGCATCTTGTGTATTATCTGAGGTTGTAACCAGGCCAAGTAGGTCATTGACTCTAGATCTTTTATTTAGAGAAGATCCTACCATGTCAGGCAA TCCTCGACATTGTGGACAACTTATTGTGCATGCCGAGGAATGCATAAGCTCAAAGAGCACAGTGGAGATGGTATTAAGGTGCTCGGATTTGGAACATAAG GATCTGTTCTCAAAAAGTGACCCATTTTTGCTAATCTCAAAAATTGTTGAGGTTGGGCTCCCCATTCCTGTGTGCAAAACAGAAGTCTTAAAAAATGATC ACAACCCAGTGTGGAAACCAATCTATTTGAGCATTCAACAAGTTGGAAGCAAGGAAAATCCATTAATGATTGAGTGTTTTAACTTCAATAGCAGTGGCAA GCATGATTTAATTGGAAAAGTTAAAAAATCATTAGTTGAGCTGGAAAAGCTTCATTCTAATGGCGAAGGAGAGAATTTATTTTTACCCACAACTGTTGGG CATAATCATCAGAATAAGGTGTTAAAGAGCCAGCTATTTGTGGACAAGTTTTCCCAAAGCAGTCAATGGACATTTTTGGATTACTTGGCCGGGGGATGTG AACTGAACTTCATGGTGGCAGTTGATTTCACGGCTTCAAATGGAAATCCCCGCCTCCCTGATTCCTTGCATTACCTTGATCCATCTGGACGGCTAAATGC ATACCAAAGAGCAATCTTAGAGGTTGGAGAGGTGTTAAAATTTTATGATTCAGATAAGCGCTTTCCGGCCTGGGGATTTGGGGCACGACCAATTGATGGT CCGGTCTCACATTGTTTTAACTTGAATGGAAGCAATAATCACAGTGAGGTAGACGGAATCCAGGGAATTATGACAGCATATACCAGTGCTCTCTATAATG TTTCTCTGGCAGGGCCAACACTTTTTGGGCCTGTGATCAGCAATGCCGCACTAATTGCTAGCCAGTCTCCTGCAAATGGAGGAAAAAAATACTTTGTTTT GTTAATAATTACGGATGGAGTTGTAACTGATCTCCAGGAAACCAAAGATGCCATAGTGAAAGCATCTGACCTGCCGCTATCAATCCTCATAGTTGGAGTT GGAGGAGCTGACTTCAAAGAAATGGAGATTTTAGATGCTGATAAAGGAGAGAGACTAGAAAGTTCAAGTGGACGTGTTGCTTCACGTGATATAGTCCAGT TTATGTCATTTCGGGATGTACAAAGTGGAGAGATTGCTGTTGTTCAAGCACTTTTGGCAGAACTACCTACCCAGTTTTTATCCTACATGCGATCCAGAGA AGACATCCAACCAAACATTTGA
AA sequence Show only first row Show all	>Potri.015G106400.1 pacid=42776291 polypeptide=Potri.015G106400.1.p locus=Potri.015G106400 ID=Potri.015G106400.1.v4.1 annot-version=v4.1 MGNCCSDVAGGRAAVGGSGAAAGNDAVDHFLKSRGMYSSQMELSFSATNLRDRDVLSKSDPILIGYTKGKDGTLAEVFRTEVVLNSLNPTWITKHVITFQ FEAVQTLVFHAYDVDTQFHNIDVKMLKLEELQFLGEASCVLSEVVTRPSRSLTLDLLFREDPTMSGNPRHCGQLIVHAEECISSKSTVEMVLRCSDLEHK DLFSKSDPFLLISKIVEVGLPIPVCKTEVLKNDHNPVWKPIYLSIQQVGSKENPLMIECFNFNSSGKHDLIGKVKKSLVELEKLHSNGEGENLFLPTTVG HNHQNKVLKSQLFVDKFSQSSQWTFLDYLAGGCELNFMVAVDFTASNGNPRLPDSLHYLDPSGRLNAYQRAILEVGEVLKFYDSDKRFPAWGFGARPIDG PVSHCFNLNGSNNHSEVDGIQGIMTAYTSALYNVSLAGPTLFGPVISNAALIASQSPANGGKKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGV GGADFKEMEILDADKGERLESSSGRVASRDIVQFMSFRDVQSGEIAVVQALLAELPTQFLSYMRSREDIQPNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61910			DCD (Development and Cell Deat...		Potri.015G106400 [exp]	0	1	Pt-BON1.2
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	5.56	0.8755
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	8.83	0.8066
AT1G07860			unknown protein		Potri.009G093700 [exp]	12.64	0.8344
AT3G54070			Ankyrin repeat family protein ...		Potri.014G058100 [exp]	15.16	0.8095
AT4G24840			unknown protein		Potri.012G096100 [exp]	17.26	0.8493
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	18.00	0.7877	ATH.1
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006100 [exp]	18.54	0.7677
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	19.07	0.8045
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	20.61	0.8339
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.006G147800 [exp]	22.62	0.7991

Compare expression of checked genes

Potri.015G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.