Plant FIBer expression Database

Pt-LEAFY.1 (Potri.015G106900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-LEAFY.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61850 432 / 5e-151 LFY LFY3, LFY LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016732
[exp]
438 / 3e-153 AT5G61850 447 / 5e-156 LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
Lus10022427
[exp]
433 / 5e-151 AT5G61850 447 / 8e-156 LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0003 SAM PF01698 SAM_LFY Floricaula / Leafy protein SAM domain
Representative CDS sequence
>Potri.015G106900.1 pacid=42775026 polypeptide=Potri.015G106900.1.p locus=Potri.015G106900 ID=Potri.015G106900.1.v4.1 annot-version=v4.1
ATGGATCCGGAGGCTTTCACGGCGAGTTTGTTCAAATGGGATACGAGAGCAATGGTGCCACATCCTAACCGTCTGCTTGAAATGGTGCCCCCGCCTCAGC
AGCCACCGGCTGCGGCGTTTGCTGTAAGGCCAAGGGAGCTATGTGGGCTAGAGGAGTTGTTTCAAGCTTATGGTATTAGGTACTACACGGCAGCAAAAAT
AGCTGAACTCGGGTTCACAGTGAACACCCTTTTGGACATGAAAGACGAGGAGCTTGATGAAATGATGAATAGTTTGTCTCAGATCTTTAGGTGGGATCTT
CTTGTTGGTGAGAGGTATGGTATTAAAGCTGCTGTTAGAGCTGAAAGAAGAAGGCTTGATGAGGAGGATCCTAGGCGTAGGCAATTGCTCTCTGGTGATA
ATAATACAAATACTCTTGATGCTCTCTCCCAAGAAGGTTTCTCTGAGGAGCCAGTACAGCAAGACAAGGAGGCAGCAGGGAGCGGTGGAAGAGGGACATG
GGAGGCAGTGGCAGCGGGGGAGAGGAAGAAACAGTCAGGGCGGAAGAAAGGCCAAAGAAAGGTGGTGGACCTTGATGGAGATGATGAACATGGTGGTGCT
ATCTGTGAGAGACAGCGGGAGCACCCATTCATTGTAACAGAGCCTGGTGAAGTGGCACGTGGCAAAAAGAACGGTCTTGATTACCTCTTCCATTTATATG
AACAGTGTCGTGATTTCTTGATCCAAGTCCAAAGCATTGCGAAGGAGAGGGGAGAAAAATGCCCCACTAAGGTGACAAATCAGGTGTTTAGGTATGCCAA
GAAGGCAGGAGCAAGCTACATCAACAAGCCCAAAATGAGACACTACGTGCATTGCTATGCTTTACATTGCCTCGATGAGGACGCATCTAACGCACTTAGG
AGAGCGTTCAAGGAGAGAGGAGAGAATGTTGGGGCATGGAGACAGGCTTGTTACAAGCCCCTTGTAGCCATCGCATCACGCCAAGGCTGGGACATAGATT
CCATTTTCAATGCTCATCCTCGGCTTGCCATTTGGTATGTGCCGACCAAGCTCCGTCAACTTTGTTATGCAGAGCGCAATAGTGCCACTTCTTCAAGCTC
TGTCTCTGGTACTGGAGGTCACCTGCCGTTTTGA
AA sequence
>Potri.015G106900.1 pacid=42775026 polypeptide=Potri.015G106900.1.p locus=Potri.015G106900 ID=Potri.015G106900.1.v4.1 annot-version=v4.1
MDPEAFTASLFKWDTRAMVPHPNRLLEMVPPPQQPPAAAFAVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDEMMNSLSQIFRWDL
LVGERYGIKAAVRAERRRLDEEDPRRRQLLSGDNNTNTLDALSQEGFSEEPVQQDKEAAGSGGRGTWEAVAAGERKKQSGRKKGQRKVVDLDGDDEHGGA
ICERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQSIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALR
RAFKERGENVGAWRQACYKPLVAIASRQGWDIDSIFNAHPRLAIWYVPTKLRQLCYAERNSATSSSSVSGTGGHLPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61850 LFY LFY3, LFY LEAFY 3, floral meristem ident... Potri.015G106900
[exp]
0 1 Pt-LEAFY.1
AT5G16990 Zinc-binding dehydrogenase fam... Potri.017G002600
[exp]
12.08 0.9063
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.004G025100
[exp]
16.37 0.8942
AT3G52600 ATCWINV2 cell wall invertase 2 (.1.2) Potri.016G077400
[exp]
24.73 0.8650
AT1G65810 P-loop containing nucleoside t... Potri.017G140400
[exp]
26.60 0.8916
AT3G47570 Leucine-rich repeat protein ki... Potri.008G007866
[exp]
27.00 0.8958
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.007G141700
[exp]
29.22 0.8904 Pt-ZOG1.2
AT2G28490 RmlC-like cupins superfamily p... Potri.009G054700
[exp]
30.33 0.8851
AT1G03670 ankyrin repeat family protein ... Potri.013G133800
[exp]
52.91 0.8754
Potri.003G004301
[exp]
78.34 0.8293
AT4G27300 S-locus lectin protein kinase ... Potri.011G126251
[exp]
84.24 0.8581

Potri.015G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.