Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61840 327 / 2e-112 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 305 / 5e-104 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G22940 126 / 3e-34 F8H FRA8 homolog (.1) AT2G28110 113 / 2e-29 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G37000 78 / 1e-16 Exostosin family protein (.1) AT5G03795 75 / 9e-16 Exostosin family protein (.1) AT5G25820 74 / 3e-15 Exostosin family protein (.1) AT5G11610 72 / 8e-15 Exostosin family protein (.1.2) AT5G11130 69 / 1e-13 Exostosin family protein (.1) AT4G38040 69 / 1e-13 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G116700 [exp] 330 / 2e-114 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.012G109200 [exp] 331 / 7e-114 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 331 / 7e-114 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 308 / 6e-105 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 306 / 3e-104 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 131 / 6e-36 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.018G043700 [exp] 76 / 5e-16 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 75 / 1e-15 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 73 / 4e-15 AT4G16745 636 / 0.0 Exostosin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043209 [exp] 318 / 1e-108 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 318 / 1e-108 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 304 / 3e-103 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 303 / 3e-103 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 129 / 3e-35 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 99 / 5e-24 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10012723 [exp] 69 / 9e-14 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10002664 [exp] 67 / 5e-13 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 67 / 7e-13 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10034951 [exp] 67 / 7e-13 AT5G19670 701 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.015G107200.1 pacid=42776182 polypeptide=Potri.015G107200.1.p locus=Potri.015G107200 ID=Potri.015G107200.1.v4.1 annot-version=v4.1 ATGGATGACCAGGCATTTGGCTTTATTTCATCAAACTGGCCTTATTGGAATCGGACTGAAGGTGCTGACCACTTTTTTGTTGTGCCACACGACTTTGGTG CATGCTTCCACTATCAAGAAGAGAAGGCTATCAAAAGAGGAATTCTTCCCTTGCTCCAACGTGCCACCTTGGTGCAAACTTTTGGACAAAGAAATCATGT TTGCTTAAGAGATGGCTTCATTACAGTTCCTCCATATGCTCCTCCACAGAAAATGCAAACCCACCTGATTCCTGAAAAAACACCTGAGGTCAATTTTTGT TTACTTCAGAGGATTGCTACTATGCAAGCAGTCTGGGAGAACTTCATGGACAATCCACTTTTTGACATTTCCACAGAGCACCTAACAATTCCGAGATTGG TTAAAGTAGTAATATTTGGCTACATCGCTATTATTATAGCTGACGACATTGTTTTACCCTTTGCTGATGCAATCCCATGGGAAGAAATTGAGGTATTTGT AGACGAGAAAGATGTTCCAAATTTGGACACCATACTCACTTCCATTCCACCTGAAGTGATATTGAGGAAGCAGAGACTGATTGCAAACCCTTCAATGAAG CAGGCAATGCTATTCCCATAA
AA sequence Show only first row Show all	>Potri.015G107200.1 pacid=42776182 polypeptide=Potri.015G107200.1.p locus=Potri.015G107200 ID=Potri.015G107200.1.v4.1 annot-version=v4.1 MDDQAFGFISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIKRGILPLLQRATLVQTFGQRNHVCLRDGFITVPPYAPPQKMQTHLIPEKTPEVNFC LLQRIATMQAVWENFMDNPLFDISTEHLTIPRLVKVVIFGYIAIIIADDIVLPFADAIPWEEIEVFVDEKDVPNLDTILTSIPPEVILRKQRLIANPSMK QAMLFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.015G107200 [exp]	0	1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	2.44	0.9365
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209900 [exp]	3.46	0.9276
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.002G020249 [exp]	4.69	0.9124
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054800 [exp]	4.69	0.9002
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.011G127250 [exp]	5.47	0.9352
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.011G163932 [exp]	6.00	0.9192
AT1G78922			unknown protein		Potri.007G001400 [exp]	6.78	0.9000
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.010G167700 [exp]	11.48	0.9262
AT3G04830			Protein prenylyltransferase su...		Potri.013G038501 [exp]	12.48	0.9124
AT1G78922			unknown protein		Potri.007G001650 [exp]	17.29	0.9109

Compare expression of checked genes

Potri.015G107200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.