Plant FIBer expression Database

Potri.015G107400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45470 89 / 1e-19 Protein of unknown function (DUF594) (.1)
AT5G45530 86 / 1e-18 Protein of unknown function (DUF594) (.1)
AT4G19090 85 / 2e-18 Protein of unknown function (DUF594) (.1)
AT4G19080 81 / 2e-17 Protein of unknown function (DUF594) (.1)
AT5G45480 82 / 3e-17 Protein of unknown function (DUF594) (.1)
AT5G45540 78 / 4e-16 Protein of unknown function (DUF594) (.1)
AT5G45460 0 / 1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G114101
[exp]
347 / 4e-115 AT5G45540 177 / 3e-46 Protein of unknown function (DUF594) (.1)
Potri.015G113400
[exp]
337 / 5e-111 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1)
Potri.015G107500
[exp]
333 / 5e-110 AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1)
Potri.015G107800
[exp]
333 / 6e-110 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1)
Potri.015G113600
[exp]
325 / 3e-106 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1)
Potri.015G113700
[exp]
320 / 1e-104 AT5G45480 181 / 2e-47 Protein of unknown function (DUF594) (.1)
Potri.015G116100
[exp]
319 / 6e-104 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1)
Potri.015G116600
[exp]
316 / 1e-102 AT5G45540 170 / 6e-44 Protein of unknown function (DUF594) (.1)
Potri.015G059200
[exp]
306 / 9e-100 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
Representative CDS sequence
>Potri.015G107400.1 pacid=42774963 polypeptide=Potri.015G107400.1.p locus=Potri.015G107400 ID=Potri.015G107400.1.v4.1 annot-version=v4.1
ATGAGGCAGATGCATGTGAATCGGAAAGATTTGAATGTTGGACTACAAGGTCTTATTTTCAAACATCTTCTAAAGAAAGCTCAGAAGATTAAGGAAGATT
TTAATGTCTTTGATAAGAACCTCAGAAGTAAAATAATAGGTCAGAGGGGAGATGGTGTGCTAGAAGGAGAGGACTACAAGTGGTGCACGACTGAAGTAGA
ATTCAGTCGGAGCATTCTTGTTTGGCATCTCGCAACAGAGATTTGTTATCTTGGTGATAAAGATGGAAGTAATGTCTCCTCAGAATTTGTTATCAATGGC
AGATACTTATCTGAATACATGATGTATCTTTTGGTGATAAGACCAAATATGCTCTCTAAAGGATTCGGTGATGAGGAATATCTAGAAACCTTGCGAGAGT
TGCGAGGATTCGGTAATGTTGATTTAATTCTGGGGCGCTACAATGAATCACGTGGTTATGATGATATAGCGTTTCAAAGGCGCTGGAAAACAGAAAAGTC
AGTGCTGATCGGTGTGGAAAAGCTCGCCAGGCAATTGCGGTCATTGGAATTGAAGAAGCGATGGGAGATGATAAATGAAGTTTGGGTAGAAATGCTAGCT
CATGCAGCAGCTCATTGTCCATGGAAAGAGCATACTCAACAACTGAGAAGAGGTGGAGAGTTACTCACTCATGTCTCCCTTCTCATGCTACATCTTGGTT
TGAGCGAACAGTATGAATATAAAGGATCAGACGACCTCCCCATTCTTACGCGTTTGACAGGGGTAAGTATACCAAAAATCTTAGGCGTCAGAATAAAATA
A
AA sequence
>Potri.015G107400.1 pacid=42774963 polypeptide=Potri.015G107400.1.p locus=Potri.015G107400 ID=Potri.015G107400.1.v4.1 annot-version=v4.1
MRQMHVNRKDLNVGLQGLIFKHLLKKAQKIKEDFNVFDKNLRSKIIGQRGDGVLEGEDYKWCTTEVEFSRSILVWHLATEICYLGDKDGSNVSSEFVING
RYLSEYMMYLLVIRPNMLSKGFGDEEYLETLRELRGFGNVDLILGRYNESRGYDDIAFQRRWKTEKSVLIGVEKLARQLRSLELKKRWEMINEVWVEMLA
HAAAHCPWKEHTQQLRRGGELLTHVSLLMLHLGLSEQYEYKGSDDLPILTRLTGVSIPKILGVRIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45470 Protein of unknown function (D... Potri.015G107400
[exp]
0 1
AT5G45540 Protein of unknown function (D... Potri.015G113600
[exp]
1.73 0.8526
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Potri.019G103900
[exp]
2.82 0.8520
AT5G34940 ATGUS3 glucuronidase 3 (.1.2.3) Potri.018G121500
[exp]
8.66 0.8172
AT4G30850 HHP2 heptahelical transmembrane pr... Potri.018G102400
[exp]
10.67 0.7722
AT5G09810 ACT2/7, ACT7 actin 7 (.1) Potri.011G148000
[exp]
10.95 0.7867 ACT6
AT4G37750 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEI... Potri.007G007400
[exp]
18.02 0.7558
AT4G38430 ATROPGEF1, ROPG... rho guanyl-nucleotide exchange... Potri.005G247100
[exp]
22.36 0.7407
AT1G13750 Purple acid phosphatases super... Potri.010G158400
[exp]
25.92 0.7424
AT5G46570 BSK2 BR-signaling kinase 2 (.1) Potri.003G088900
[exp]
27.34 0.7632
AT1G25580 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION ... Potri.010G129700
[exp]
29.15 0.6990

Potri.015G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.