Plant FIBer expression Database

Potri.015G107500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1)
AT5G45480 159 / 3e-40 Protein of unknown function (DUF594) (.1)
AT5G45530 149 / 3e-37 Protein of unknown function (DUF594) (.1)
AT5G45470 127 / 5e-30 Protein of unknown function (DUF594) (.1)
AT5G45460 122 / 2e-28 unknown protein
AT4G19080 110 / 5e-26 Protein of unknown function (DUF594) (.1)
AT4G19090 107 / 1e-23 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G113600
[exp]
939 / 0 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1)
Potri.015G107900
[exp]
936 / 0 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1)
Potri.015G107800
[exp]
929 / 0 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1)
Potri.015G116100
[exp]
907 / 0 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1)
Potri.015G112012
[exp]
895 / 0 AT5G45540 191 / 7e-51 Protein of unknown function (DUF594) (.1)
Potri.015G116600
[exp]
895 / 0 AT5G45540 170 / 6e-44 Protein of unknown function (DUF594) (.1)
Potri.015G113700
[exp]
884 / 0 AT5G45480 181 / 2e-47 Protein of unknown function (DUF594) (.1)
Potri.015G113400
[exp]
869 / 0 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1)
Potri.015G114101
[exp]
857 / 0 AT5G45540 177 / 3e-46 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.015G107500.2 pacid=42775037 polypeptide=Potri.015G107500.2.p locus=Potri.015G107500 ID=Potri.015G107500.2.v4.1 annot-version=v4.1
ATGACAATGCTTAAAAAATTGCCTGAAGAAGTCTTAAATTTATGGAACAATTGGGAGATTCGAGGGATGGTTTTGCTTAGTCTCTTACTACAAACCATCC
TCATCGTATTTGGTCCTCGGCGAAAGACCATTGGAAGAATCTGGATCAGGATTCTCGTTTGGTCTGCGTACCTATCAGCAGACATGGTGGCAACTGTTGC
ACTGGGTAATCTAGCCAGGAGCCAAGGAGATTCATCAGGTGACAGTTCAGAGAAAGCAAACAATTCCATCCAGACATTTTGGGCACCTTTTCTACTCCTG
CACCTTGGTGGCCCAGACACAATCACTGCATACTCGATTGAAGATAACGAGTTGTGGTTAAGGCATTTACTTGGTCTCGTAGTTCAAGTCGGAGTGGCTC
TTTATGTCTTCTCAAGGTCTTGGCCTAGCGGTATCCTCACATTCATAGCGATCCCAATGTTCATTGCTGGCGTTGTAAAGTACGCAGAGAGGACTTGGGT
GCTCTGGTCTTCATGCTCCAAGAGTTTGAAAAACTCCTCTCTCTCAGATTTTTGGCGTCGTTCTATTGATCTGAGAATAACAGAAATAGCTGGGAACCAA
GATGATCTACAGAGAGAATATCTTCGTCAAGCTTGTACTTTTTTTTATATATCCAAGTATATGATGCAGGATCTTGTCACTAGCACTATAGATCTAATGC
TGAGCCAGTTGCTGATTTCTAGAATCTCAGTAGACGGTGCCTTCAAGGTGGTAGAGGTTGAGCTTGGATTGATATCTGATATGCTTTATACTAAAGCGCC
TCTGATTTACTCCCGTGCCGGAATCGTTCTTCGCTCGATCAGCTTTCTGCTCTCTGTTTCTGCTTTTATTGCTTTCCTCAAGATTGGCAAGCATGCCTAC
TCAATGACCGACATTACAATCACGTATTTATTGTTTGGGGCCGCAGTTTTTCTCGAGTTGTATGCTTTTTTATGCCTTGTTTTGTCTGACTGGACAATGA
TTTGGTTGATTGATAAAGGAGGGAACGCCCTGACTACTGCAATTTATTCTCAGCTAAGGAAGTTAACTAGAAGCGAGAGGTGGTCGAGATCCATATCACA
GTATAACCTGATAAGCTCTTCCTTTGAAAGCGAGCAACCTAAATGCTTGGAATTGCTGGGAATCGATGAAATGATGAGGCAGATGCATGTGAATCGGAAA
TATTTGAATGTTGGACTAAAACGTTTTATTTTCGAACATCTTCAAAAGAAAGCTGAGAATCTGAAGGAAAATTTTAATTTCATTGATAAGAATTTCAGAA
GTAAAATAATAGGTCAGAGGGGAGATGGTGTGCTAGAAAGAGAGAGACTGTTAAAGGAGTACAAGTGGTGCACGACTGAAGTAGAATTCAGTCGGAGCAT
TCTTGTATGGCATCTCGCAACAGATATTTGTTATGTAAAAGATGGAAGCAATGTCTCCTCAGAATATGAAACAAGCAGATGCCTATCTGAATACATGATG
TATCTTTTGGTGATAAGACCAAATATGCTCTCCAAAGGATTCGAAGATGAGGGATATCTAGAAACTTTGGGAGGCTTGCGGAGACTAAAAGATCGTGGTA
CCGATGATGTTGTTGATTTAATTATGGGCTACAATAAATCACGTGGTTGTGATGAGATAACGTTACAACGTCTCTGGAAAACACAAAAGTCAGTGTTAAG
TGGTGTGGAAAGGCTCGCCAACCAATTGCTGCAATTGGGACCTGAGAAGCGATGGGAGATGATAAATGAAGTTTGGATAGAAATGCTTGTTTATGCAGCC
GCTCATTGTCCATGGAAAGAACATACTCAACAACTGAGAAGAGGTGGAGAGTTGCTCACCCATGTCTGCTTTCTTATGCTACATCTTGGTTTGAGTGAAC
AGTACGAGTTTAAAGAATTTGATGACAGCACCGTTCTTATGCGTTTGGAATTGACACCGGAGGAGAAAACACAATTTATCCAGGCTAAAGACAAATATTT
GAAAGGTATGGCAGACATGTCAGAGTCAACTCCCAATGAGAAGGAGGTGGAAGAACTTAAAAAGATTGTGGCAATTAAAGATCAAGAGCTTGAGTTGTTG
AGATCTCGTTTAGCTGCATATGGCGAGTTTGAAGAGGATAAAAAATATGATGCTGATGATCAAGGGACCGGTCAACCTCCATCAAATAATGAGATTAGTT
TAAGCATGGAATAA
AA sequence
>Potri.015G107500.2 pacid=42775037 polypeptide=Potri.015G107500.2.p locus=Potri.015G107500 ID=Potri.015G107500.2.v4.1 annot-version=v4.1
MTMLKKLPEEVLNLWNNWEIRGMVLLSLLLQTILIVFGPRRKTIGRIWIRILVWSAYLSADMVATVALGNLARSQGDSSGDSSEKANNSIQTFWAPFLLL
HLGGPDTITAYSIEDNELWLRHLLGLVVQVGVALYVFSRSWPSGILTFIAIPMFIAGVVKYAERTWVLWSSCSKSLKNSSLSDFWRRSIDLRITEIAGNQ
DDLQREYLRQACTFFYISKYMMQDLVTSTIDLMLSQLLISRISVDGAFKVVEVELGLISDMLYTKAPLIYSRAGIVLRSISFLLSVSAFIAFLKIGKHAY
SMTDITITYLLFGAAVFLELYAFLCLVLSDWTMIWLIDKGGNALTTAIYSQLRKLTRSERWSRSISQYNLISSSFESEQPKCLELLGIDEMMRQMHVNRK
YLNVGLKRFIFEHLQKKAENLKENFNFIDKNFRSKIIGQRGDGVLERERLLKEYKWCTTEVEFSRSILVWHLATDICYVKDGSNVSSEYETSRCLSEYMM
YLLVIRPNMLSKGFEDEGYLETLGGLRRLKDRGTDDVVDLIMGYNKSRGCDEITLQRLWKTQKSVLSGVERLANQLLQLGPEKRWEMINEVWIEMLVYAA
AHCPWKEHTQQLRRGGELLTHVCFLMLHLGLSEQYEFKEFDDSTVLMRLELTPEEKTQFIQAKDKYLKGMADMSESTPNEKEVEELKKIVAIKDQELELL
RSRLAAYGEFEEDKKYDADDQGTGQPPSNNEISLSME

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45540 Protein of unknown function (D... Potri.015G107500
[exp]
0 1
AT5G45540 Protein of unknown function (D... Potri.015G116600
[exp]
4.89 0.9132
AT3G55950 CCR3, ATCRR3 CRINKLY4 related 3 (.1) Potri.001G252400
[exp]
7.34 0.9086
AT3G50870 GATA GATA18, HAN, MN... MONOPOLE, HANABA TANARU, GATA ... Potri.005G122700
[exp]
7.61 0.9263
AT5G45540 Protein of unknown function (D... Potri.015G116100
[exp]
9.79 0.9039
AT5G45540 Protein of unknown function (D... Potri.015G112012
[exp]
10.39 0.8961
AT5G45540 Protein of unknown function (D... Potri.015G107300
[exp]
11.83 0.9008
AT2G27140 HSP20-like chaperones superfam... Potri.004G191200
[exp]
12.24 0.9259
AT5G45540 Protein of unknown function (D... Potri.015G116201
[exp]
12.64 0.8941
AT1G65810 P-loop containing nucleoside t... Potri.004G077600
[exp]
13.85 0.9232
AT5G45470 Protein of unknown function (D... Potri.015G108000
[exp]
13.85 0.9165

Potri.015G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.