Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45540 213 / 9e-59 Protein of unknown function (DUF594) (.1) AT5G45470 211 / 2e-57 Protein of unknown function (DUF594) (.1) AT5G45480 202 / 1e-54 Protein of unknown function (DUF594) (.1) AT5G45460 199 / 2e-54 unknown protein AT5G45530 183 / 3e-48 Protein of unknown function (DUF594) (.1) AT4G19090 135 / 1e-32 Protein of unknown function (DUF594) (.1) AT4G19080 88 / 1e-18 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G113600 [exp] 1073 / 0 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1) Potri.015G116100 [exp] 1064 / 0 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1) Potri.015G112012 [exp] 1064 / 0 AT5G45540 191 / 7e-51 Protein of unknown function (DUF594) (.1) Potri.015G113700 [exp] 1031 / 0 AT5G45480 181 / 2e-47 Protein of unknown function (DUF594) (.1) Potri.015G114101 [exp] 1009 / 0 AT5G45540 177 / 3e-46 Protein of unknown function (DUF594) (.1) Potri.015G116600 [exp] 1008 / 0 AT5G45540 170 / 6e-44 Protein of unknown function (DUF594) (.1) Potri.015G113400 [exp] 1001 / 0 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1) Potri.015G107500 [exp] 927 / 0 AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1) Potri.015G107900 [exp] 917 / 0 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04578 [poplar] [flax] DUF594 Protein of unknown function, DUF594 PF13968 [poplar] [flax] DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence Show only first row Show all	>Potri.015G107800.1 pacid=42775483 polypeptide=Potri.015G107800.1.p locus=Potri.015G107800 ID=Potri.015G107800.1.v4.1 annot-version=v4.1 ATGACAATGCTTAAAAACTTGCCTGAAGAAGTCTTTAATTTATGGAACAATTGGGAGATTCGAGGAATGGTTTTGCTTAGTCTCTTCCTACAAACCATCC TCATCATATTTGGGTCTCGGCGAAAGACCACTCGCAGAAGCTGGATCAGGATTCTCGTTTGGTCTGCATATCTATCAGCAGACATGGTGGCAACTGTTGC ACTGGGTAATCTAGCCAGGAGCCAAGGAGATTCATCAGGTGACAGTTCAGAGAAAGCAAACAGTTCCATCCAGGCATTTTGGGCACCTTTTCTACTCCTG CACCTTGGTGGCCCGGACACAATCACTGCATACTCGATTGAAGATAACGAGTTGTGGTTAAGGCATTTACTTGGTCTTGTAGTCCAAGTCGGAGTGGCTT TTTATGTCTTCTCAAAGTCTTGGCCTAGCGGTATTCTCGCATTCATAGCGATCCCAATGTTCATTGTTGGCATTGTAAAATACGCAGAGAGGACTTGGGT GCTCTGGTCTTCATGCTCCAAGAGTCTGAAAAACTCTTCTATCTACGATTTTTCGGGTTCTTATAATCGTTCAAGAATATCAAAAACTCCTCCACAAGAC CTCCAGGAAAATTGTCTTCTTCAAGCTTATGTTTTTTCTTATATATCCAAGTTAGTGATGCAGGATCTTGTCCCTGACATTCCTTCACTAATAAGAAGCA GGGAGCTGATTTCAAAAAATGAAGCAGACGGTGCCTTCAAGGTGGTAGAGGTTGAGCTTGGATTGATATATGATATGCTTTACACTAAAGCGCCTCTGAT TTACTCCCGTGCCGGAATCATTCTTCGCTGTATCAGCTCTCTGCTCTCTGTTACTGCGTTTATTACCTTCCAGGTCATGATAGACAAGCATGACTACTCA ACGGCCGACATTGCAGTGACGTATTTATTGTTTGCGGCCGCAGTTTTTCTCGAGTTCTATGCTTTTTTATGCCTTGTTTTGTCTGACTGGACAATGATTT GGTTGATTGATAAAGGAGGGAACGGCCTGACTAGTGCAACTTATTCTCAGCTAAGGAAGTTAACTAGAAGCGAGAGGTGGTCGAGATCCATATCACAGTA TAACCTGATAAGCTCTTCCTTTGAAAGCGAGCCACCTAAATGCTTGGAATTGCTGGGAATCGATGAAATGATGAGGCAAATGCATGTGAATCGGAAAGAT TTGAATGTTGGACTACAAGGTCTTATTTTCGGACATCTTCTAAAGAAAGCTGAGAAGATTAAGGAGGATTTGAATGTCTGTGATAAAAATGTCAGAAGTA AAATAATTGGTCAGAGGGGAGATGGTGTGCTAGAAAGAGAGGGAGTGTTACGGGACTTCAAGTGGTGCACGACTGAAGTAGAATTCAGTCGGAGCATTCT TGTCTGGCATCTCGCAACAGAGATTTGTTATCGTGCTGATAAAGATGAAAGCAATGTCTCCAAAGAATATGAAACAAGCAGATCCCTATCTGAATACATG ATGTATCTTTTGGTGATGAGACCAAATATGCTCTCTAAAGGATTCGGTGATGAGGGATATCTAGAAACCTTGCGAGAATTGCGGGGTCTAAAAGATCGTG GTCCTGGTGATGAGGGATATCAGCGTATCTTGCGAGAATTGCGCAACAGTGAATCACCAGGATGGAATCGTTATGATGATGGATTGTTTCAACGTTACTG GAAAACAGAAAAGCCAGTGACACGTGGTGTATATGTGCTCGCCAGGCAATTGCTTTTATTGGAATCCAAGAAGCGATGGGAGACGATAAATGAAGTTTGG GTAGAAATGGTTGCATATGCAGCAGCTCAGTGTCCATGGAAAGAACATACTCAACAACTGAGAAGAGGTGGAGAGTTACTCACTCATGTCTCCCTTCTCA TGCTACATCTTGGCTTGAGCGAACAGTACGAATATAAAAGATTAGGCGAGCTCATTTCTTATTTGAAAGAGGAGGAGAAAGAAGAATATTTCAACGCTAG AGACAAATATATGGAAGGTGCAGCCATGTCAGGGTCGAATCTTGGTGAGGAGTTGGAAGAACTTAAAAAGATTGTAGCAGATACAAAGCGAGAGCTTGAG CAACTGAGATCTTCTTTAACTGCATCAACTCCACAACAAGGAATTGATTCATTTCCAAGGAGTTTGCCAGCACAAACTGATGGTCAAGGGATTGGTCAAC CACCATCAAATAATGATATCAGTTTAAGCATGGAATAA
AA sequence Show only first row Show all	>Potri.015G107800.1 pacid=42775483 polypeptide=Potri.015G107800.1.p locus=Potri.015G107800 ID=Potri.015G107800.1.v4.1 annot-version=v4.1 MTMLKNLPEEVFNLWNNWEIRGMVLLSLFLQTILIIFGSRRKTTRRSWIRILVWSAYLSADMVATVALGNLARSQGDSSGDSSEKANSSIQAFWAPFLLL HLGGPDTITAYSIEDNELWLRHLLGLVVQVGVAFYVFSKSWPSGILAFIAIPMFIVGIVKYAERTWVLWSSCSKSLKNSSIYDFSGSYNRSRISKTPPQD LQENCLLQAYVFSYISKLVMQDLVPDIPSLIRSRELISKNEADGAFKVVEVELGLIYDMLYTKAPLIYSRAGIILRCISSLLSVTAFITFQVMIDKHDYS TADIAVTYLLFAAAVFLEFYAFLCLVLSDWTMIWLIDKGGNGLTSATYSQLRKLTRSERWSRSISQYNLISSSFESEPPKCLELLGIDEMMRQMHVNRKD LNVGLQGLIFGHLLKKAEKIKEDLNVCDKNVRSKIIGQRGDGVLEREGVLRDFKWCTTEVEFSRSILVWHLATEICYRADKDESNVSKEYETSRSLSEYM MYLLVMRPNMLSKGFGDEGYLETLRELRGLKDRGPGDEGYQRILRELRNSESPGWNRYDDGLFQRYWKTEKPVTRGVYVLARQLLLLESKKRWETINEVW VEMVAYAAAQCPWKEHTQQLRRGGELLTHVSLLMLHLGLSEQYEYKRLGELISYLKEEEKEEYFNARDKYMEGAAMSGSNLGEELEELKKIVADTKRELE QLRSSLTASTPQQGIDSFPRSLPAQTDGQGIGQPPSNNDISLSME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45540			Protein of unknown function (D...		Potri.015G107800 [exp]	0	1
AT5G45540			Protein of unknown function (D...		Potri.015G116600 [exp]	1.00	0.9400
AT5G45540			Protein of unknown function (D...		Potri.015G116100 [exp]	2.44	0.9212
AT4G39700			Heavy metal transport/detoxifi...		Potri.007G087300 [exp]	3.46	0.9237
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.014G154500 [exp]	3.46	0.9208
AT5G45540			Protein of unknown function (D...		Potri.015G116201 [exp]	6.70	0.8966
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.007G024500 [exp]	6.70	0.9080	Pt-MNP.1
AT5G45780			Leucine-rich repeat protein ki...		Potri.004G059100 [exp]	7.87	0.8541
AT3G50120			Plant protein of unknown funct...		Potri.003G159300 [exp]	12.84	0.9192
AT5G45540			Protein of unknown function (D...		Potri.015G107500 [exp]	14.14	0.9076
AT5G45540			Protein of unknown function (D...		Potri.015G107900 [exp]	14.89	0.9137

Compare expression of checked genes

Potri.015G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.