Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45470 132 / 5e-36 Protein of unknown function (DUF594) (.1) AT5G45480 131 / 8e-36 Protein of unknown function (DUF594) (.1) AT5G45540 130 / 2e-35 Protein of unknown function (DUF594) (.1) AT5G45460 124 / 4e-33 unknown protein AT5G45530 117 / 7e-31 Protein of unknown function (DUF594) (.1) AT4G19090 87 / 2e-20 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G107900 [exp] 281 / 2e-91 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1) Potri.015G116100 [exp] 266 / 4e-85 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1) Potri.015G113600 [exp] 258 / 2e-82 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1) Potri.015G059200 [exp] 255 / 1e-81 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1) Potri.015G107800 [exp] 255 / 2e-81 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1) Potri.015G107300 [exp] 242 / 3e-80 AT5G45540 179 / 3e-50 Protein of unknown function (DUF594) (.1) Potri.015G107500 [exp] 251 / 8e-80 AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1) Potri.015G116201 [exp] 248 / 4e-79 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1) Potri.015G114900 [exp] 243 / 2e-77 AT5G45540 189 / 1e-50 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13968 [poplar] [flax] DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence Show only first row Show all	>Potri.015G107950.1 pacid=42774934 polypeptide=Potri.015G107950.1.p locus=Potri.015G107950 ID=Potri.015G107950.1.v4.1 annot-version=v4.1 ATGCTTAAAAATTTTCCTGAAGAAGTCATAAATTTGTGGAACAATGGGGAGATTCGAGGAATGGTTTTGCTTAGTCTCTTACTACAAACCATCCTCATCG TATTTGGTTCTCGGCGAAAGACCATTGCCAGAAGCTGGATCAGGATTCTCGTTTGGTCTGCATACCTATCAGCAGACATGGTGGCAACTGTTGCTTTGGG TAATCTAGCCAGGAGCCAAGGATATTCATCAGGTGACGGTTCAAAAAAAGCAAACAATTCCATCCAGGCATTTTGGGCACCTTTTCTACTCCTGCACCTT GGTGGCCCAGACACAATCACAGCATACTCGATTGAAGATAACGAGTTGTGGTTAAGGCACGCACTTGGTCTTGTAGTCCAAGTCGGAGTGGCTTTTTATG TCTTCTCGAGGTCTTTGGGTAGCGGTATCCTCACTTTCATAGCAATCCCGGTGTTCATTGTCGGCATTATAAAAGTACGCAGAGAGGACTTGGGTGCTCA GTTCTTCAAGCTCTGA
AA sequence Show only first row Show all	>Potri.015G107950.1 pacid=42774934 polypeptide=Potri.015G107950.1.p locus=Potri.015G107950 ID=Potri.015G107950.1.v4.1 annot-version=v4.1 MLKNFPEEVINLWNNGEIRGMVLLSLLLQTILIVFGSRRKTIARSWIRILVWSAYLSADMVATVALGNLARSQGYSSGDGSKKANNSIQAFWAPFLLLHL GGPDTITAYSIEDNELWLRHALGLVVQVGVAFYVFSRSLGSGILTFIAIPVFIVGIIKVRREDLGAQFFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45470			Protein of unknown function (D...		Potri.015G107950 [exp]	0	1
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.014G146600 [exp]	3.31	0.7175
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	9.27	0.7118
AT5G07900			Mitochondrial transcription te...		Potri.004G012300 [exp]	10.24	0.6999
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	33.34	0.6902
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G099600 [exp]	40.91	0.6538
AT2G23690			unknown protein		Potri.005G130200 [exp]	53.40	0.6097
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	71.17	0.6216
AT5G52552		CPuORF14	conserved peptide upstream ope...		Potri.017G143300 [exp]	78.80	0.5838
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	118.14	0.5834	Pt-NQR.3
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	133.16	0.5396

Compare expression of checked genes

Potri.015G107950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.