Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51010 160 / 6e-51 Rubredoxin-like superfamily protein (.1) AT5G17170 62 / 7e-12 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2) AT1G54500 39 / 0.0006 Rubredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042600 [exp] 60 / 5e-11 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2) Potri.013G035700 [exp] 40 / 0.0004 AT1G54500 197 / 2e-64 Rubredoxin-like superfamily protein (.1) Potri.012G109700 [exp] 0 / 1 AT5G51010 0 / 1 Rubredoxin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022430 [exp] 173 / 6e-56 AT5G51010 190 / 8e-63 Rubredoxin-like superfamily protein (.1) Lus10016735 [exp] 172 / 2e-55 AT5G51010 189 / 3e-62 Rubredoxin-like superfamily protein (.1) Lus10027889 [exp] 79 / 2e-19 AT5G51010 102 / 2e-29 Rubredoxin-like superfamily protein (.1) Lus10003157 [exp] 63 / 5e-12 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10002349 [exp] 63 / 5e-12 AT5G17170 360 / 5e-126 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10015945 [exp] 41 / 0.0002 AT1G54500 182 / 2e-58 Rubredoxin-like superfamily protein (.1) Lus10019005 [exp] 41 / 0.0002 AT1G54500 188 / 1e-60 Rubredoxin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G108100.1 pacid=42775861 polypeptide=Potri.015G108100.1.p locus=Potri.015G108100 ID=Potri.015G108100.1.v4.1 annot-version=v4.1 ATGGCCTTGCATGCACCAATAAGGCTTCAAGCCACAAAAACATCACCGCCACCTTCTCTTTTAGCTCCTAATGGCAACAATGTTGGTCTTAAAGGTCCAA CTGATCGTTTTGCTCTAAAATCATCCTTCTTTTCTCCTTCACTTCACCTCTTGATTGCTTCTTACAATCAGCAGCAGCCTCTTGCATCTGCTGCACCAAG ATTCTCCATGCGTGCTGCAACCAAGCAGGCCTACATTTGTAGAGATTGCGGGTATATTTACAATGACAGGAAACCCTTTGACAAACAGCCTGATAATTAC TTCTGCCCTGTTTGTGGTGCTCCTAAAAGGAGATTTAGGGAATACATGCCTGCTGTGACAAAAAATGTTAATGACAAAGATGTTCGTAAGGCACGTAAAG AACAGATCCAGAAAGATGAAGCAATTGGGCGAGCTTTGCCAATTGCAGTGGTGGTTGGAATTGTAGCTCTTGCTGGCATATACTTCTACATCAACAATTC CTTCCCAGGTTGA
AA sequence Show only first row Show all	>Potri.015G108100.1 pacid=42775861 polypeptide=Potri.015G108100.1.p locus=Potri.015G108100 ID=Potri.015G108100.1.v4.1 annot-version=v4.1 MALHAPIRLQATKTSPPPSLLAPNGNNVGLKGPTDRFALKSSFFSPSLHLLIASYNQQQPLASAAPRFSMRAATKQAYICRDCGYIYNDRKPFDKQPDNY FCPVCGAPKRRFREYMPAVTKNVNDKDVRKARKEQIQKDEAIGRALPIAVVVGIVALAGIYFYINNSFPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51010			Rubredoxin-like superfamily pr...		Potri.015G108100 [exp]	0	1
AT3G47070			unknown protein		Potri.001G249600 [exp]	2.23	0.9709
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.006G060400 [exp]	8.30	0.9643
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.015G078100 [exp]	8.77	0.9630
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	10.19	0.9675
AT2G03420			unknown protein		Potri.010G161400 [exp]	10.39	0.9635
AT3G12930			Lojap-related protein (.1)		Potri.011G142900 [exp]	10.67	0.9631
					Potri.005G164800 [exp]	10.77	0.9522
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Potri.009G102400 [exp]	10.95	0.9521
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	15.32	0.9635	NPQ4.1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016000 [exp]	16.00	0.9623

Compare expression of checked genes

Potri.015G108100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.