Plant FIBer expression Database

Potri.015G108200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23760 267 / 1e-91 unknown protein
AT4G14100 261 / 3e-89 transferases, transferring glycosyl groups (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G068800
[exp]
286 / 1e-98 AT3G23760 282 / 8e-98 unknown protein
Potri.018G096056
[exp]
196 / 1e-63 AT3G23760 214 / 2e-71 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032527
[exp]
254 / 5e-86 AT3G23760 250 / 6e-85 unknown protein
Lus10043212
[exp]
251 / 1e-84 AT3G23760 243 / 5e-82 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G108200.1 pacid=42774982 polypeptide=Potri.015G108200.1.p locus=Potri.015G108200 ID=Potri.015G108200.1.v4.1 annot-version=v4.1
ATGGGCTCTAAAGTCAAATCTCTCTCTCTCCTCATTCTCCCATTAGCCTTCTCTCTTTGTTTCTCTTCACTATCATCAAAACCAGCAGACCCAACTCCAG
CTCCATGGCCACACCAATTCCACTCAATACTCTTCATGGATAACAATGGCTCACTTCAGGTGGTGGACCTCTGGTATGACTGGACTAATGGCCGCAACTT
CAACATAATCCAGAACCAACTTGGAAAGCTTCTTTATGACCTTGAATGGGATAATGGCACCTCCTATATCTACACGTTAGACTCCAATAAAGAATGCAGA
GTCTTGCATTTCCCAGTTGGTGTTCTCCGCCCCAATTGGCTTGAAGGTGCTACCCATCTTGGCCAACAAGAAGTTGATGGCTTCCTCTGCAATGTGTGGC
AGAAGGTGGACTTTATTTGGTACTATGAAGATGTCATAACAAAGAGACCTGTTTACTGGGTCTTTTACACAGGAATGACTGCTCATGTGATGACATTTGA
AGTGGGGGCGGTGCTAGAGGATCCGAAGTGGCAGGCTCCTGTTTACTGCTTTAAGGAGTCTGAGAAGAAGGAGAACACTGTCATTAAATCTGTGGTTAGT
CATGGATTATCTCGTGAAGGGTTAATGACAGGATCGTTTAATGTTTCTATGCTGTACTGA
AA sequence
>Potri.015G108200.1 pacid=42774982 polypeptide=Potri.015G108200.1.p locus=Potri.015G108200 ID=Potri.015G108200.1.v4.1 annot-version=v4.1
MGSKVKSLSLLILPLAFSLCFSSLSSKPADPTPAPWPHQFHSILFMDNNGSLQVVDLWYDWTNGRNFNIIQNQLGKLLYDLEWDNGTSYIYTLDSNKECR
VLHFPVGVLRPNWLEGATHLGQQEVDGFLCNVWQKVDFIWYYEDVITKRPVYWVFYTGMTAHVMTFEVGAVLEDPKWQAPVYCFKESEKKENTVIKSVVS
HGLSREGLMTGSFNVSMLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G23760 unknown protein Potri.015G108200
[exp]
0 1
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Potri.011G003800
[exp]
2.64 0.9809
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Potri.005G183000
[exp]
4.24 0.9781
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.016G072100
[exp]
5.47 0.9787 Pt-BAS1.2,PtrcPrx2-cysA
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.010G150300
[exp]
5.91 0.9770
AT2G28190 CZSOD2, CSD2 copper/zinc superoxide dismuta... Potri.009G163200
[exp]
6.63 0.9780
AT4G34620 SSR16 small subunit ribosomal protei... Potri.013G128200
[exp]
7.07 0.9720
AT5G58250 EMB3143 EMBRYO DEFECTIVE 3143, unknown... Potri.013G161000
[exp]
7.21 0.9709
AT4G01150 unknown protein Potri.002G166800
[exp]
10.39 0.9726 CAM2.2
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Potri.002G253800
[exp]
10.58 0.9746 PSAE1.1
AT4G02530 chloroplast thylakoid lumen pr... Potri.006G067600
[exp]
11.83 0.9701

Potri.015G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.