Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51030 468 / 1e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 432 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 218 / 1e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G24190 188 / 8e-58 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G61220 182 / 2e-55 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 171 / 2e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37540 77 / 9e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 68 / 8e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G09750 67 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 63 / 4e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G110200 [exp] 566 / 0 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G127700 [exp] 246 / 3e-80 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G235500 [exp] 192 / 2e-59 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 193 / 4e-59 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 190 / 2e-58 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 189 / 3e-58 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 189 / 5e-58 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 188 / 8e-58 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 187 / 2e-57 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043023 [exp] 487 / 6e-175 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032524 [exp] 484 / 6e-174 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032525 [exp] 427 / 3e-151 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034835 [exp] 224 / 7e-72 AT3G59710 335 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035736 [exp] 224 / 1e-71 AT3G59710 355 / 2e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008413 [exp] 204 / 7e-64 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10019546 [exp] 196 / 8e-61 AT2G24190 253 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 189 / 4e-58 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 187 / 1e-57 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 182 / 4e-55 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.015G108400.1 pacid=42775148 polypeptide=Potri.015G108400.1.p locus=Potri.015G108400 ID=Potri.015G108400.1.v4.1 annot-version=v4.1 ATGGGAAGTAAAGAGCCAGCAAAGGAAAAGAGAGAAAAAAGACTCCAAGAAATTTCTCTTCTCCGTACCATTCCTTACTCTGATCATCAAAGGTGGTGGT CATCAGAAACTGTTGCTGTGGTGACCGGTGGAAATAGAGGAATAGGATTTGAGATTGCGAGGCAACTTGCAGACCATGGATTGTCTGTTATCCTGACATC ACGAGAAAGTAGCGCAGGCCTTGAAGCTGCCAATGTCTTGCGAGAGTTGGGTTTGAGTGTGGACTTCCATCAACTTGATGTCTTAGATTCTTTATCCATC AAAACGTTTGCTGAGTGGATACAACAAACTTACGGCGGATTAGATGTTTTGGTGAATAATGCTGGTGTTAATTACAATATGGGGTCTGACAATTCTGTTG AAAATGCCAAGAATGTTGTTGATACAAACTATTATGGTATCAAAAATGTCACTGAAGCTCTGATTCCTTTGATGAGACCTTCTTCTGTAGGTGCTCGTAT TGTTAATGTAAGTTCACGGCTTGGAAGACTAAATGGCAAACGAAACAGACTTGAAGACAAAGATTTGAGAGAGCAACTGGCTAACCTGGAAACACTTTCA GAGGAACTCATTGATAGGACGGTGTCTACTTTCCTACAACAAGTAGAAGACCGCACATATACATCAGGTGGATGGCCTCAGGTGAACACTGATTACTCGG TGTCAAAACTTGCAGTTAATGCTTATACTAGGCTAATGGCAAAGAAACTGTCCGATCGGCCTAATGGTCAGAAGATCTATATAAACTGCTACTGCCCAGG GTGGGTGAAGACAGCTATGACAGGCTGGGCTGGTAATGTATCAGCTGAGGATGGAGCTGACACAGGAGTATGGCTGGCCCTGCTTCCAGACCAAGCAATC ACAGGGAAATTTTTTGCTGAGAGACGTGAGGTAAACTTCTGA
AA sequence Show only first row Show all	>Potri.015G108400.1 pacid=42775148 polypeptide=Potri.015G108400.1.p locus=Potri.015G108400 ID=Potri.015G108400.1.v4.1 annot-version=v4.1 MGSKEPAKEKREKRLQEISLLRTIPYSDHQRWWSSETVAVVTGGNRGIGFEIARQLADHGLSVILTSRESSAGLEAANVLRELGLSVDFHQLDVLDSLSI KTFAEWIQQTYGGLDVLVNNAGVNYNMGSDNSVENAKNVVDTNYYGIKNVTEALIPLMRPSSVGARIVNVSSRLGRLNGKRNRLEDKDLREQLANLETLS EELIDRTVSTFLQQVEDRTYTSGGWPQVNTDYSVSKLAVNAYTRLMAKKLSDRPNGQKIYINCYCPGWVKTAMTGWAGNVSAEDGADTGVWLALLPDQAI TGKFFAERREVNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	0	1
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.010G129932 [exp]	1.00	0.9607
AT5G52960			unknown protein		Potri.016G123100 [exp]	3.46	0.9603
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	4.69	0.9366
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	4.89	0.9602
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.014G012700 [exp]	6.70	0.9308
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.014G124100 [exp]	7.21	0.9325
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	7.41	0.9539
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.008G093901 [exp]	10.19	0.9202
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Potri.006G165900 [exp]	12.96	0.9258
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	17.34	0.9122

Compare expression of checked genes

Potri.015G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.