Plant FIBer expression Database

Potri.015G108500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61820 469 / 3e-163 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108600
[exp]
712 / 0 AT5G61820 477 / 3e-166 unknown protein
Potri.015G108800
[exp]
610 / 0 AT5G61820 468 / 7e-163 unknown protein
Potri.015G108700
[exp]
603 / 0 AT5G61820 453 / 5e-157 unknown protein
Potri.012G110300
[exp]
550 / 0 AT5G61820 366 / 9e-125 unknown protein
Potri.012G110600
[exp]
316 / 7e-107 AT5G61820 153 / 4e-44 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004249
[exp]
520 / 0 AT5G61820 435 / 2e-150 unknown protein
Lus10017316
[exp]
487 / 1e-170 AT5G61820 436 / 1e-150 unknown protein
Lus10003210
[exp]
485 / 6e-170 AT5G61820 431 / 1e-148 unknown protein
Lus10042158
[exp]
482 / 6e-169 AT5G61820 415 / 1e-142 unknown protein
Lus10033851
[exp]
402 / 8e-137 AT5G61820 316 / 6e-103 unknown protein
Lus10015933
[exp]
389 / 6e-132 AT5G61820 306 / 7e-100 unknown protein
Lus10017315
[exp]
161 / 7e-48 AT5G61820 130 / 1e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07712 SURNod19 Stress up-regulated Nod 19
Representative CDS sequence
>Potri.015G108500.1 pacid=42775544 polypeptide=Potri.015G108500.1.p locus=Potri.015G108500 ID=Potri.015G108500.1.v4.1 annot-version=v4.1
ATGGCACTTTGTTCTCAAGGAGGCTTGCTTTTGTTTGCAATGCTAATACTGGCATTTGATGTATCCGGCACCCTAGCTTCGCCGGAAATTGCAATTCAGA
TCAAATCTGCCACTTTTCTTTCACCTGAGTTTGTGCTGGGACCAGGATCAGTGGAGGATAGATACTATAGCAATATTGACTTCCCCAGAGGTCATGTTGG
TATCAAGAGTTTCAAAGCTGAAGTGATTGATAATATCGGGAACCCTATACCCCTTCACGAAACTTATCTTCACCATTGGGTTGTCGCGAAATACTATCAA
CGTCAGGGTATGGCTGAGAACAATGATAAGCATAAGTTTCAGCTGTCAGATTATTTATTTGCAGGAAACAGTGGAATATGCCAAGGGAATGTTCTGGGAC
AGTATTTTGGACTTGGATCCGAAACACGAAAAACAGATACTTATGTTCCCAATCCTTATGCAATAGAAATTGGCAACCCAGATGAAGTTCCTGAAGGGTA
TGAGGAGAAATGGTTGCTTAATGTTCATGCAATTGATACACGTGGCGCCGTAGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAACATCACA
GTGGATCAACATGGTCAACCTTTGAGGCCAGGCTACATAGGAGGTCTGAGATGTTGCTATGACCAAACTCAGTGTAAGGTACAACAAGGTTATGGGGGTG
CCAGAAGGAGTCTATACTTGCGATATACGGTGGAATGGGTGGATTGGGATTGCAGCATTATTCCTGTTAAAATCTTTATATTTGATGTCACCGATACTGG
GAAAAGGCTTAATGGCTCAACAGGAGTAGGTCCAGAGAATGGTTGCCAGGTTGAGTATAATGTTGAGTCTTGCAGCAGCGCCATTAATGCAGCTTCTGAT
GGATGCATTGATGCCAAAAGGACAAGCCTGACAATGCCAATCAGTGGTTATGTCATCTACGGTGTTGCTCATCAGCATACTGGGGGAGCTGGTTCAACTC
TGTATGGGGAGGATGGACGTGTTATATGTACTTCAGAACCAATTTATGGAACTGGAAAGGATGTAGGAGACGAGGCAGGTTACATAGTAGGAATGTCCAC
CTGTTATCCTGAACCAGGCTCTATCCAGATAACAGCTGGGGAGAATCTACTTCTTGAATCTAACTACAACAGTACTCAAAAGCACACAGGAGTCATGGGG
CTTTTCTACATTCTGGTAGCAGACAGAACACCAAATCCCACAAATTTCTTGCATTCTCCAATTCATATACATAAAAACATCAAAGTATCCACACCTGCTG
TAGCAATAGTAGCTCTGTTTGGACTGGCAATGGCCATTGCTGTCGGCCTACTTTCTCGGATGAAGAAGGGAAGGGAAGAAGGCTACCAACCAATTATGGC
ATAG
AA sequence
>Potri.015G108500.1 pacid=42775544 polypeptide=Potri.015G108500.1.p locus=Potri.015G108500 ID=Potri.015G108500.1.v4.1 annot-version=v4.1
MALCSQGGLLLFAMLILAFDVSGTLASPEIAIQIKSATFLSPEFVLGPGSVEDRYYSNIDFPRGHVGIKSFKAEVIDNIGNPIPLHETYLHHWVVAKYYQ
RQGMAENNDKHKFQLSDYLFAGNSGICQGNVLGQYFGLGSETRKTDTYVPNPYAIEIGNPDEVPEGYEEKWLLNVHAIDTRGAVDRLGCTECRCDLYNIT
VDQHGQPLRPGYIGGLRCCYDQTQCKVQQGYGGARRSLYLRYTVEWVDWDCSIIPVKIFIFDVTDTGKRLNGSTGVGPENGCQVEYNVESCSSAINAASD
GCIDAKRTSLTMPISGYVIYGVAHQHTGGAGSTLYGEDGRVICTSEPIYGTGKDVGDEAGYIVGMSTCYPEPGSIQITAGENLLLESNYNSTQKHTGVMG
LFYILVADRTPNPTNFLHSPIHIHKNIKVSTPAVAIVALFGLAMAIAVGLLSRMKKGREEGYQPIMA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61820 unknown protein Potri.015G108500
[exp]
0 1
AT3G21790 UDP-Glycosyltransferase superf... Potri.006G007200
[exp]
1.41 0.9436
AT1G80300 ATNTT1 nucleotide transporter 1 (.1) Potri.003G058900
[exp]
1.73 0.9385 AATP1.2
AT5G13080 WRKY ATWRKY75, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Potri.003G169100
[exp]
2.23 0.9482
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.009G011900
[exp]
4.00 0.9358
AT3G21790 UDP-Glycosyltransferase superf... Potri.016G016500
[exp]
5.00 0.9167
AT3G54300 ATVAMP727 vesicle-associated membrane pr... Potri.010G239900
[exp]
6.70 0.9338 Pt-VAMP727.2
AT1G66920 Protein kinase superfamily pro... Potri.017G116955
[exp]
7.74 0.9331
AT2G35980 NHL10, YLS9, AT... YELLOW-LEAF-SPECIFIC GENE 9, A... Potri.016G071600
[exp]
8.94 0.9317
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.007G075000
[exp]
9.16 0.9287
AT5G41610 ATCHX18 cation/H+ exchanger 18, ARABID... Potri.003G134900
[exp]
9.32 0.9156

Potri.015G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.