Plant FIBer expression Database

Potri.015G108600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61820 478 / 2e-166 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108500
[exp]
711 / 0 AT5G61820 470 / 2e-163 unknown protein
Potri.015G108700
[exp]
626 / 0 AT5G61820 453 / 5e-157 unknown protein
Potri.015G108800
[exp]
613 / 0 AT5G61820 468 / 7e-163 unknown protein
Potri.012G110300
[exp]
490 / 1e-173 AT5G61820 366 / 9e-125 unknown protein
Potri.012G110600
[exp]
279 / 1e-92 AT5G61820 153 / 4e-44 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004249
[exp]
550 / 0 AT5G61820 435 / 2e-150 unknown protein
Lus10042158
[exp]
512 / 1e-180 AT5G61820 415 / 1e-142 unknown protein
Lus10017316
[exp]
503 / 7e-177 AT5G61820 436 / 1e-150 unknown protein
Lus10003210
[exp]
501 / 2e-176 AT5G61820 431 / 1e-148 unknown protein
Lus10015933
[exp]
382 / 2e-129 AT5G61820 306 / 7e-100 unknown protein
Lus10033851
[exp]
382 / 5e-129 AT5G61820 316 / 6e-103 unknown protein
Lus10017315
[exp]
157 / 3e-46 AT5G61820 130 / 1e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07712 SURNod19 Stress up-regulated Nod 19
Representative CDS sequence
>Potri.015G108600.2 pacid=42776227 polypeptide=Potri.015G108600.2.p locus=Potri.015G108600 ID=Potri.015G108600.2.v4.1 annot-version=v4.1
ATGGTACATTCTTTTCGAGCCTGCTTGCTTTTGTTTGCAATACTAATACTGGCATCTAATCTATCTTATACACGAGCTTCTATGAAAGGTGGTAATAAGA
TCAAATCTGCCACTTTCCTATCACCAAAATTTGTGTTGGGACCAGGATCTGTGGAGAATAGATTCTATCGCAATGTTGACTTCCCAAAAGGTCATATTGG
AATCAAGAGTTTCAATGCTGAAGTGATTGATGATACTGGGAATCCTGTCCCTCTTCACGAAACTTATCTTCACCACTGGCTTGTTTCGAGATACTATCAA
CGGCTAGATGCGGTTGAGACTAACCATGAGCAGAAGTTTAAGGAATCAGATCGCATTTCTGCACGTAATAGTGGAATATGCCAGAAAGGTATTCTTAATC
AGTATTTTGGCCTGGGATCTGAAACACGAAAAACAGCTACGCGCATTCCTGATCCCTATGCAATAGAAATTGGCAATCCAGCTGAAATTCCTGTTGGGTA
TGAGGAGAGATGGTTGCTTAATGTCCATGCAATCGATACACGGGGTGCTGAAGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTATACAACATCACA
GTTAGTGAATGGGGACGCCCTTTGAGGCCAGACTATAAAGGAGGCTTACTTTGTTGCTATGATCATACACAATGCAAGGTCAAACAAGGTTTCCAGGGTA
CCAGGAGGAGTCTTTACCTGCGATACACTGTGGAATGGGTTGAATGGGATAGTGACATTATTCCTGTTAAAATCTTTATATTTGATGTCACTGATACTGG
GAAAAGGCTAAATGGTTCAACAGGATTCGGTCCAGAGAATGGTTGCCAGGTTGAATATGAAATCAAGTCTTGCAGCTCCACTGATACTGCTGTTAATGGG
TGTGTTGATGTCAAAAGGACAAACTTTACCATGCCAACTACTGGCTATCTCATCTATGGTGTTGCCCACCAGCATACTGGAGGAATTGGTTCGACTCTGT
ATGGGAAGGATGGACGTGTTATATGTACTTCACTACCAACATATGGAGAAGGAAAAGAAGCGGGAAATGAGGCAGGTTACATTGTAGGAATGTCCACATG
TTATCCTGAACCAGGCTCTATCCAGATAACAGCTGGGGAGAAGCTAGTTCTGGAATCCAACTACAGCAGAGATCAAAACCACACAGGAGTTATGGGGCTT
TTCTACATATTGGTTGCAGACCGAACACCAAACCCCACGAGTTTGCTACACGCTCCCATTCATATGCATGTAAACATGAAAGGATCCACATATGCGGTTG
CAATTATAGCTTTGTTCGGAATGGCAATAGCTGTTGCTGTCACTGTACATTCTCGGCTAAAGAAGGGGAGAGAAGAAGGCTACCAGCCAATGCTGGCATA
G
AA sequence
>Potri.015G108600.2 pacid=42776227 polypeptide=Potri.015G108600.2.p locus=Potri.015G108600 ID=Potri.015G108600.2.v4.1 annot-version=v4.1
MVHSFRACLLLFAILILASNLSYTRASMKGGNKIKSATFLSPKFVLGPGSVENRFYRNVDFPKGHIGIKSFNAEVIDDTGNPVPLHETYLHHWLVSRYYQ
RLDAVETNHEQKFKESDRISARNSGICQKGILNQYFGLGSETRKTATRIPDPYAIEIGNPAEIPVGYEERWLLNVHAIDTRGAEDRLGCTECRCDLYNIT
VSEWGRPLRPDYKGGLLCCYDHTQCKVKQGFQGTRRSLYLRYTVEWVEWDSDIIPVKIFIFDVTDTGKRLNGSTGFGPENGCQVEYEIKSCSSTDTAVNG
CVDVKRTNFTMPTTGYLIYGVAHQHTGGIGSTLYGKDGRVICTSLPTYGEGKEAGNEAGYIVGMSTCYPEPGSIQITAGEKLVLESNYSRDQNHTGVMGL
FYILVADRTPNPTSLLHAPIHMHVNMKGSTYAVAIIALFGMAIAVAVTVHSRLKKGREEGYQPMLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61820 unknown protein Potri.015G108600
[exp]
0 1
AT4G26150 GATA GATA22, CGA1, G... GNC-LIKE, GATA TRANSCRIPTION F... Potri.006G229200
[exp]
4.58 0.9375
AT5G59030 COPT1 copper transporter 1 (.1) Potri.009G038800
[exp]
6.63 0.9353 COPT1.2
AT4G02340 alpha/beta-Hydrolases superfam... Potri.002G202700
[exp]
8.12 0.9384
AT2G24390 AIG2-like (avirulence induced ... Potri.018G003000
[exp]
8.36 0.9315
AT1G29700 Metallo-hydrolase/oxidoreducta... Potri.008G117600
[exp]
13.19 0.9412
AT1G48450 Protein of unknown function (D... Potri.015G031200
[exp]
15.87 0.9303
AT1G52827 ATCDT1 cadmium tolerance 1 (.1) Potri.001G177366
[exp]
17.43 0.9312
AT5G36700 ATPGLP1, 2-PHOS... 2-phosphoglycolate phosphatase... Potri.010G180400
[exp]
28.19 0.9350
AT2G43840 UGT74F1 UDP-glycosyltransferase 74 F1 ... Potri.007G117200
[exp]
28.56 0.9265 Pt-ZOG1.9
AT1G08280 Glycosyltransferase family 29 ... Potri.009G144000
[exp]
29.66 0.9241

Potri.015G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.