Plant FIBer expression Database

Potri.015G108700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61820 453 / 7e-157 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108800
[exp]
837 / 0 AT5G61820 468 / 7e-163 unknown protein
Potri.015G108600
[exp]
628 / 0 AT5G61820 477 / 3e-166 unknown protein
Potri.015G108500
[exp]
603 / 0 AT5G61820 470 / 2e-163 unknown protein
Potri.012G110300
[exp]
423 / 2e-147 AT5G61820 366 / 9e-125 unknown protein
Potri.012G110600
[exp]
237 / 5e-76 AT5G61820 153 / 4e-44 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004249
[exp]
494 / 7e-174 AT5G61820 435 / 2e-150 unknown protein
Lus10003210
[exp]
476 / 2e-166 AT5G61820 431 / 1e-148 unknown protein
Lus10017316
[exp]
476 / 2e-166 AT5G61820 436 / 1e-150 unknown protein
Lus10042158
[exp]
444 / 6e-154 AT5G61820 415 / 1e-142 unknown protein
Lus10015933
[exp]
380 / 9e-129 AT5G61820 306 / 7e-100 unknown protein
Lus10033851
[exp]
372 / 9e-125 AT5G61820 316 / 6e-103 unknown protein
Lus10017315
[exp]
149 / 2e-43 AT5G61820 130 / 1e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07712 SURNod19 Stress up-regulated Nod 19
Representative CDS sequence
>Potri.015G108700.1 pacid=42775563 polypeptide=Potri.015G108700.1.p locus=Potri.015G108700 ID=Potri.015G108700.1.v4.1 annot-version=v4.1
ATGATACGTTTGCTTGAGAAGTGGCAGAAACTATTGAATTCATCGGGCAACATGGTACTTCTGTTAGTACTTTTAATGCTGGTTTTTGACGTATCATATA
CACAAGCTTTCCAGGAAAATGGAAACAAGATCAAATCTAGAACTTACCTGTCACCCGAGTTTATGTTGGGGCCAGGATCTGTTGAGAGCAAAACATACGA
TGATATTGACTTCCCAAGAGGTCATATTGCTCTCAAGAGTTTTAATGCGGAGGTAGTTGATCAGGATGGGAATCCTGTACCTCTTTATGAAACGTACATT
CACCACTGGCTTGTGGGAAAGTACTATGAGAATCGCCCATCACAGCGTAATTTTTCACGAAACAGTGGATTATGCCAGGGTCAAATTCTTGGACAGTATT
TTGGCCTTGGATCTGAAACACGAAAAACAGCTACACATATTCCAGATCCTTTTGGAATAGAAATTGGCAATCCTGCCGAAATTCCTGAAGGGTATCAGGA
GAAGTGGTATCTTGGTATCCATGCAATTGAAACACGGGGTGCGGAAGATAGGCTGGGGTGCATTGAATGCTGGTGTGATCTATATAATGTCACAAACGAT
GAATATGGAAACCCCATAAGGCCAGACTATAAGGGAGGTTTATTTTGTTGCTATGGTCAGACACAGTGCAAAGTCAGGCAGGGTTTTCAGGGGGGCAAGA
GGAGCCTCTACCTGCGATATACGGTGAAATGGATTGAGTGGGATAGTTCCACCATTCCTGTTGAAATTTTTGTGCTAGATGCTACTGATACTGGAAAAAG
GTTCCTTGGATCAACAGGAATCAGTCCAGAGGATGGTTGCCAGGTTGAGTATGAAGTTGAGTCTTGCACCTCTACCGATGCAGCTGGTAATGGGTGCATT
GACATCAAAAGAAACAGCGTCACCATGCCAACAGGTGGTTATGTCGTCTATGCTGTTGCCCACCAGCATGCTGGTGGGATCGGTTCAACTCTGTATGGAC
AGGATGGGAACGTAATATGCGCTTCAATACCAATTTATGGAAATGGAAATGAAGCAGGAAACGAGGATGGTTACATTGTAGGAATGTCCACCTGTTATCC
TGAACCAGGTTCTGTCAAGATAACAGCTGGGGAGAATCTAACTCTGGAATCTAACTATGACAGCACTAATAAGCACACAGGAGTCATGGGGTTTTTCTAC
ATTTACATAGCAGAACAAGCACCAAATGTGACTTTCTCACATGCTCCTGTTCAGATGCATGAAAGCATTAAAGTAAAAACTTGTGCTTGGTCAATAGTGG
TTTTCATTGGACTGGCTGTGACTGCTGCTGTTTCTGTGCATTCCTGGCTGAAGAAAAGGAGAGAAGGTGGCTACAAACTAGTTCCTGAATAA
AA sequence
>Potri.015G108700.1 pacid=42775563 polypeptide=Potri.015G108700.1.p locus=Potri.015G108700 ID=Potri.015G108700.1.v4.1 annot-version=v4.1
MIRLLEKWQKLLNSSGNMVLLLVLLMLVFDVSYTQAFQENGNKIKSRTYLSPEFMLGPGSVESKTYDDIDFPRGHIALKSFNAEVVDQDGNPVPLYETYI
HHWLVGKYYENRPSQRNFSRNSGLCQGQILGQYFGLGSETRKTATHIPDPFGIEIGNPAEIPEGYQEKWYLGIHAIETRGAEDRLGCIECWCDLYNVTND
EYGNPIRPDYKGGLFCCYGQTQCKVRQGFQGGKRSLYLRYTVKWIEWDSSTIPVEIFVLDATDTGKRFLGSTGISPEDGCQVEYEVESCTSTDAAGNGCI
DIKRNSVTMPTGGYVVYAVAHQHAGGIGSTLYGQDGNVICASIPIYGNGNEAGNEDGYIVGMSTCYPEPGSVKITAGENLTLESNYDSTNKHTGVMGFFY
IYIAEQAPNVTFSHAPVQMHESIKVKTCAWSIVVFIGLAVTAAVSVHSWLKKRREGGYKLVPE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61820 unknown protein Potri.015G108700
[exp]
0 1
AT5G17540 HXXXD-type acyl-transferase fa... Potri.011G153500
[exp]
1.00 0.9440
AT3G03480 CHAT acetyl CoA:(Z)-3-hexen-1-ol ac... Potri.001G447900
[exp]
6.16 0.9114
AT3G03480 CHAT acetyl CoA:(Z)-3-hexen-1-ol ac... Potri.001G447832
[exp]
7.48 0.8704
AT3G21700 ATSGP2 Ras-related small GTP-binding ... Potri.014G152100
[exp]
7.74 0.8767
AT2G25735 unknown protein Potri.006G244200
[exp]
10.19 0.8443
AT1G62500 Bifunctional inhibitor/lipid-t... Potri.003G111300
[exp]
11.22 0.8193
AT3G48280 CYP71A25 "cytochrome P450, family 71, s... Potri.011G131051
[exp]
12.84 0.8459
AT5G57420 AUX_IAA IAA33 indole-3-acetic acid inducible... Potri.006G166900
[exp]
15.87 0.8247
AT5G57150 bHLH bHLH035 basic helix-loop-helix (bHLH) ... Potri.006G074700
[exp]
18.02 0.8128
AT5G66460 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl ... Potri.002G184500
[exp]
24.12 0.8916

Potri.015G108700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.