Plant FIBer expression Database

Potri.015G108800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61820 467 / 2e-162 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108700
[exp]
865 / 0 AT5G61820 453 / 5e-157 unknown protein
Potri.015G108600
[exp]
629 / 0 AT5G61820 477 / 3e-166 unknown protein
Potri.015G108500
[exp]
621 / 0 AT5G61820 470 / 2e-163 unknown protein
Potri.012G110300
[exp]
436 / 3e-152 AT5G61820 366 / 9e-125 unknown protein
Potri.012G110600
[exp]
239 / 5e-77 AT5G61820 153 / 4e-44 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004249
[exp]
496 / 2e-174 AT5G61820 435 / 2e-150 unknown protein
Lus10017316
[exp]
477 / 1e-166 AT5G61820 436 / 1e-150 unknown protein
Lus10003210
[exp]
476 / 2e-166 AT5G61820 431 / 1e-148 unknown protein
Lus10042158
[exp]
449 / 6e-156 AT5G61820 415 / 1e-142 unknown protein
Lus10015933
[exp]
378 / 5e-128 AT5G61820 306 / 7e-100 unknown protein
Lus10033851
[exp]
377 / 4e-127 AT5G61820 316 / 6e-103 unknown protein
Lus10017315
[exp]
149 / 3e-43 AT5G61820 130 / 1e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07712 SURNod19 Stress up-regulated Nod 19
Representative CDS sequence
>Potri.015G108800.1 pacid=42775811 polypeptide=Potri.015G108800.1.p locus=Potri.015G108800 ID=Potri.015G108800.1.v4.1 annot-version=v4.1
ATGATAAATCTGCCTGAGAAGTGGCAGAGACTATGGAATTCATCGGGCAACATGGTACTTCTGTTAGTACTTTCAATACTGGCTTTTGACGTATCTTGTA
CACAAGCTTTTCTGGAAAATGGAAACAAGATCAAATCTAGAACTTTCCTGTCACCTGAGTTCATGTTGGGGCCAGGATCAGTTGAGAGCAAAACATACGA
TGATATTGACTTCCCAAGAGGTCATATCGCTCTCAAGAGTTTTAATGCGGAGGTAGTTGATCAGGCTGGGAATCCTGTACCTCTTTATGAAACTTACATT
CACCACTGGCTTGTGGGAAAGTACTATGAGCATCTCCCATCAGGCCGTAATTTTTCACGAAATAGTGGATTGTGCCAGGGTCAAATTCTTGGACAGTATT
TTGGCCTTGGATCTGAAACACGAAAAACAGTTACACATATTCCAGATCCTTTTGGAATAGAAATTGGCAATCCTGCCGAAATTCCTGAAGGGTATCAGGA
GAAGTGGTATCTTGGTGTCCATGCAATTGAAACACGGGGTGTGGAAGATAGGCTGGGGTGCATTGAATGCTGGTGTGATCTATATAACGTCACAAACGAT
GAAGATGGAAACCCCATTAGGCCAGACTATAAGGGAGGTTTATTTTGTTGCTATGGTCAGACACAGTGCAAAGTCAGACAGGGTTTTCAGGGGGGCAAGA
GGAGCCTCTACCTGCGATATACGGTGAAATGGATTGATTGGGATAGTTCCACCATTCCTGTTGAAATCTTTGTGTTAGATGTTACTGATACTGGAAAAAG
GCTCCTTGGATCAACAGGAATCAGTCCAGAGAATGGTTGCCAGGTTGAGTATGCAGTTGAGTCTTGCACTGCTACCGATGCAGCTGGTAATGGGTGCATT
GACATCAAAAGAAATAGCCTCACCATGCCAACTGGTGGTTATGTCATCTATGCCGTTGCCCACCAGCATGCTGGTGGGATAGGTTCAACTCTGTATGGAC
AGGATGGGAACGTATTATGCACTTCAATACCAATTTATGGAAATGGAAATGAAGCAGGAAACGAGGATGGTTACATTGTAGGAATGTCCTCCTGTTATCC
TGAACCAGGTTCTGTCAAGATAACAGCTGGGGAGAATCTAACTCTGGAATCTAACTACAACAGCACTAATAAGCACACAGGAGTCATGGGGCTCTTCTAC
ATTTACATAGCAGAACAAGCACCAAATGTGACTTTCTCACAAGCTCCTGTTCAGATGCATGAAAGCATTAAAGTAACAACTTACGCTTGGTCAATTGTGG
TTTTCATTGGACTGGCTGTGACTATTGCTGTTGCTGTTGCTGTGCATTCCTGGCTGAAGAAAAGGAGAGAAGGTGGCTACAAACCAGTTCCTAAATAA
AA sequence
>Potri.015G108800.1 pacid=42775811 polypeptide=Potri.015G108800.1.p locus=Potri.015G108800 ID=Potri.015G108800.1.v4.1 annot-version=v4.1
MINLPEKWQRLWNSSGNMVLLLVLSILAFDVSCTQAFLENGNKIKSRTFLSPEFMLGPGSVESKTYDDIDFPRGHIALKSFNAEVVDQAGNPVPLYETYI
HHWLVGKYYEHLPSGRNFSRNSGLCQGQILGQYFGLGSETRKTVTHIPDPFGIEIGNPAEIPEGYQEKWYLGVHAIETRGVEDRLGCIECWCDLYNVTND
EDGNPIRPDYKGGLFCCYGQTQCKVRQGFQGGKRSLYLRYTVKWIDWDSSTIPVEIFVLDVTDTGKRLLGSTGISPENGCQVEYAVESCTATDAAGNGCI
DIKRNSLTMPTGGYVIYAVAHQHAGGIGSTLYGQDGNVLCTSIPIYGNGNEAGNEDGYIVGMSSCYPEPGSVKITAGENLTLESNYNSTNKHTGVMGLFY
IYIAEQAPNVTFSQAPVQMHESIKVTTYAWSIVVFIGLAVTIAVAVAVHSWLKKRREGGYKPVPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61820 unknown protein Potri.015G108800
[exp]
0 1
AT4G23420 NAD(P)-binding Rossmann-fold s... Potri.003G128800
[exp]
2.44 0.9318
AT3G26040 HXXXD-type acyl-transferase fa... Potri.010G056400
[exp]
2.82 0.9460
AT3G26040 HXXXD-type acyl-transferase fa... Potri.010G056300
[exp]
3.16 0.9105
AT4G27290 S-locus lectin protein kinase ... Potri.011G125501
[exp]
3.46 0.9289
AT3G26040 HXXXD-type acyl-transferase fa... Potri.010G056450
[exp]
4.00 0.9429
AT2G40095 Alpha/beta hydrolase related p... Potri.008G067700
[exp]
10.95 0.9006
AT5G01830 ARM repeat superfamily protein... Potri.006G107600
[exp]
11.40 0.9257
AT5G58240 FHIT FRAGILE HISTIDINE TRIAD (.1.2) Potri.013G161100
[exp]
11.48 0.9224
AT2G37390 NAKR2 SODIUM POTASSIUM ROOT DEFECTIV... Potri.001G234700
[exp]
12.00 0.9098
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.011G150400
[exp]
12.00 0.8825

Potri.015G108800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.