Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51050 725 / 0 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G07320 680 / 0 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G61810 637 / 0 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G01100 169 / 6e-48 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 150 / 8e-41 Mitochondrial substrate carrier family protein (.1) AT4G32400 148 / 1e-39 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT2G37890 137 / 3e-36 Mitochondrial substrate carrier family protein (.1) AT3G55640 132 / 1e-34 Mitochondrial substrate carrier family protein (.1) AT4G26180 127 / 8e-33 Mitochondrial substrate carrier family protein (.1) AT1G14560 111 / 6e-27 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G110700 [exp] 856 / 0 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 174 / 6e-50 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 171 / 9e-49 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 166 / 1e-46 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 159 / 5e-44 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G252100 [exp] 140 / 4e-37 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 136 / 6e-36 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 134 / 5e-35 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 134 / 9e-35 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016736 [exp] 751 / 0 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 747 / 0 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 736 / 0 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 541 / 0 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032523 [exp] 209 / 3e-65 AT5G07320 204 / 3e-64 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 166 / 7e-47 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 165 / 1e-46 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 162 / 3e-45 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 161 / 7e-45 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 142 / 5e-38 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.015G108900.2 pacid=42774999 polypeptide=Potri.015G108900.2.p locus=Potri.015G108900 ID=Potri.015G108900.2.v4.1 annot-version=v4.1 ATGGAAACAGACACAAACCCCAACCCGAATCAAACCGGTTGTTGCAACCCGGTTAAAAAACCAGGCCCGGTATCACTAGATCATGTATTACTGGCATTGA GAGAAACGAAAGAAGAGAGAGATGTTAGAATTAGAAGTTTGTTCAGTTTTTTTGATGCAGCAAATTTGGGGTATTTAGATTATGCCCAGATTGAAGCCGG GTTATCGGGGCTCCAAATCCCTGCTGAGTATAAGTATGCGAAAGATTTGTTGAAAGTTTGTGATGCAAATCGTGATGGAAGGGTTGATTATCAGGAGTTT AGGAGGTATATGGATGATAAAGAAATGGAGCTGTATAGGATTTTTCAAGCTATTGATGTTGAACATAATGGCTGCATTTTGCCTGAGGAGTTATGGGATG CTCTTGTCAAGGATGGGATTGAAATTGATGACGAGGAGCTTGCCCATTTTGTAGAGCATGTTGATAAGGATAATAATGGAATTATAACTTTTGAAGAATG GAGAGATTTTCTTTTACTCTATCCACATGAAGCTACTATTGAAAACATCTACCATCACTGGGAAAGGGTATGCCATGTAGATATTGGAGAACAAGCTGTC ATTCCAGAAGGAATCAGCAAGCAAGTTCACAGGAGTAAATATTTTATTGCCGGGGGTATAGCGGGAGCCGCGTCTCGTACTGCAACTGCTCCTCTTGATC GACTAAAGGTCTTTTTACAAATTCAGACCTCATGTGCTCGTCTGGCGCCTATTATTAACAAGATATGGAAGGAAGAAGGTTTCTTGGGTTTTTTCCGTGG TAACGGGTTAAATGTTGTGAAGGTGGCACCTGAAAGTGCCATCAAGTTTTATGCATATGAAATGTTAAAGGATGTCATTGGAGATTTTAAGGGGGGAGAC AAGGTTGATATAGGTCCTGGTGGGAGACTTCTAGCTGGTGGTATGGCAGGTGCAGTTGCACAGACTGCAATCTATCCTATGGATCTTGTGAAAACTCGCT TACAAACTGGTGTTTGTGAAGGTGGAAAGGCTCCAAAATTGGGAGTACTGATGAAGGATATATGGGTTCTGGAGGGACCTCGAGCTTTTTATAGAGGTCT TGTGCCATCTCTTCTCGGGATTATCCCATATGCTGGCATTGACCTTGCTGCGTATGAGACTCTGAAAGATATGTCAAAGACTTATATACTGCAAGACAGC GCACCTGGTCCCCTTGTTCAATTGTGTTGTGGAACAATCTCAGGAGCCCTTGGAGCAACATGTGTTTACCCCTTGCAGGTTATTAGAACTAGGATGCAAG CTCAACCTCCTAATGATGCTAGACCTTACAAAGGAATGTCTGACGTATTTTGGAGGACATTTCAGAATGAAGGTTGTAGAGGTTTTTACAAAGGGATTTT TCCAAATCTTCTGAAGGTTGTGCCAGCAGCAAGCATAACATATATGGTTTATGAGGCTATGAAAAAGAGTTTAGAACTTGATTAG
AA sequence Show only first row Show all	>Potri.015G108900.2 pacid=42774999 polypeptide=Potri.015G108900.2.p locus=Potri.015G108900 ID=Potri.015G108900.2.v4.1 annot-version=v4.1 METDTNPNPNQTGCCNPVKKPGPVSLDHVLLALRETKEERDVRIRSLFSFFDAANLGYLDYAQIEAGLSGLQIPAEYKYAKDLLKVCDANRDGRVDYQEF RRYMDDKEMELYRIFQAIDVEHNGCILPEELWDALVKDGIEIDDEELAHFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCHVDIGEQAV IPEGISKQVHRSKYFIAGGIAGAASRTATAPLDRLKVFLQIQTSCARLAPIINKIWKEEGFLGFFRGNGLNVVKVAPESAIKFYAYEMLKDVIGDFKGGD KVDIGPGGRLLAGGMAGAVAQTAIYPMDLVKTRLQTGVCEGGKAPKLGVLMKDIWVLEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKTYILQDS APGPLVQLCCGTISGALGATCVYPLQVIRTRMQAQPPNDARPYKGMSDVFWRTFQNEGCRGFYKGIFPNLLKVVPAASITYMVYEAMKKSLELD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.015G108900 [exp]	0	1
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	8.83	0.7052
AT2G28330			unknown protein		Potri.016G142100 [exp]	10.19	0.7435
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.009G088400 [exp]	27.05	0.7002
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074033 [exp]	38.14	0.6975
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	40.47	0.6349
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.001G097700 [exp]	52.42	0.6696
AT5G17680			disease resistance protein (TI...		Potri.013G097300 [exp]	53.57	0.6402
AT5G07900			Mitochondrial transcription te...		Potri.001G030300 [exp]	73.83	0.6019
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	83.13	0.5675
AT5G07900			Mitochondrial transcription te...		Potri.003G190700 [exp]	103.14	0.6265

Compare expression of checked genes

Potri.015G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.