Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07330 133 / 3e-40 unknown protein AT1G63060 67 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111000 [exp] 270 / 3e-94 AT5G07330 130 / 4e-39 unknown protein Potri.012G110900 [exp] 114 / 9e-33 AT5G07330 81 / 5e-20 unknown protein Potri.003G160700 [exp] 103 / 2e-28 AT1G63060 114 / 4e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018040 [exp] 128 / 5e-38 AT5G07330 117 / 1e-33 unknown protein Lus10042036 [exp] 123 / 7e-36 AT5G07330 118 / 3e-34 unknown protein Lus10002567 [exp] 60 / 3e-12 AT1G63060 89 / 3e-24 unknown protein Lus10001796 [exp] 59 / 1e-11 AT1G63060 87 / 2e-23 unknown protein Lus10000001 [exp] 47 / 1e-07 AT1G63060 71 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G109100.2 pacid=42776587 polypeptide=Potri.015G109100.2.p locus=Potri.015G109100 ID=Potri.015G109100.2.v4.1 annot-version=v4.1 ATGGCTGTTAGATCAATGGGTTATTGGAAATCAATGGCTAGTCGCTTAAGAGGAACGGCGACATATGCAACATCAACCCCACCAAAACTGAAATATGCAG AAACAGCTGATCAATTCGGACATCAGTATCATCAAGAAAGCAAGCACAGCAAGAAGGTAAGAGGTGACTTTGTGCCAGTTTATGTAGCAATAGGGATGAT AACTGTCTCAATATCTCTTGGTCTTTACACTGCCAAGCAACAAGTACTGTATGCACCGAATGTTCGTGTAAGGAAGAAGACAAGAGAGACTGTACCTGAA GTGGTTGATCCTGATAAAGTGGTGGATGAAGCTGATAAGTTTATCAGGAAATCTTTCTTCAGGAAAGTAGCACATGTTCAAGAGTTTGATCACAATGGGC TCCAGTATTTGCCTGATCCTTCTCGTAAAGACGTTTTCGCTCAAAAGCCTCGTGCTGAGACCCTTAAAGATGTTGGGATTGATCCTAAATCACAGCTTTG A
AA sequence Show only first row Show all	>Potri.015G109100.2 pacid=42776587 polypeptide=Potri.015G109100.2.p locus=Potri.015G109100 ID=Potri.015G109100.2.v4.1 annot-version=v4.1 MAVRSMGYWKSMASRLRGTATYATSTPPKLKYAETADQFGHQYHQESKHSKKVRGDFVPVYVAIGMITVSISLGLYTAKQQVLYAPNVRVRKKTRETVPE VVDPDKVVDEADKFIRKSFFRKVAHVQEFDHNGLQYLPDPSRKDVFAQKPRAETLKDVGIDPKSQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07330			unknown protein		Potri.015G109100 [exp]	0	1
AT4G36600			Late embryogenesis abundant (L...		Potri.005G122400 [exp]	2.00	0.7938
AT2G47480			Protein of unknown function (D...		Potri.010G140800 [exp]	9.64	0.7538
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	10.09	0.7281
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	11.95	0.6614	Pt-WRKY15.2
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	15.09	0.7358
AT1G75810			unknown protein		Potri.002G020200 [exp]	20.44	0.6701
AT5G41761			unknown protein		Potri.002G167900 [exp]	24.97	0.6918
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	28.39	0.6037
AT3G47160			RING/U-box superfamily protein...		Potri.009G045400 [exp]	30.46	0.6034
AT1G33055			unknown protein		Potri.001G452500 [exp]	34.58	0.6193

Compare expression of checked genes

Potri.015G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.