Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SN4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07350 1377 / 0 TSN1, AtTudor1 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) AT5G61780 1364 / 0 TSN2, AtTudor2 Arabidopsis thaliana TUDOR-SN protein 2, TUDOR-SN protein 2 (.1) AT2G11271 48 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111200 [exp] 1802 / 0 AT5G07350 1382 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032520 [exp] 1488 / 0 AT5G07350 1359 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) Lus10043020 [exp] 1484 / 0 AT5G07350 1353 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00565 [poplar] [flax] SNase Staphylococcal nuclease homologue CL0049 [poplar] [flax] Tudor PF00567 [poplar] [flax] TUDOR Tudor domain
Representative CDS sequence Show only first row Show all	>Potri.015G109300.1 pacid=42775676 polypeptide=Potri.015G109300.1.p locus=Potri.015G109300 ID=Potri.015G109300.1.v4.1 annot-version=v4.1 ATGGCGACGTCAACAGCTGGAGCTACAGGATGGTACAGAGGAAAAGTGAAAGCAGTTCCTTCAGGGGATAGCTTGGTGATAATGGCTATGACTAGCAGTA AGCCTGGCCCTCCACCGGAAAAGACTATCACTTTGTCCTCTCTCATTGCCCCGAGATTGGCTCGCAGAGGTGGTGTAGATGAGCCATTTGCCTGGAACAG CAGAGAGTATTTGAGGAAGCTCTGCATAGGAAAGGAAGTGACTTTCAAGGTAGATTACGCTGTTCCATCCATTGGCAGAGAATTCGGCTCTGTGTTCCTT GGTGAAAAAAATGTTGCATTGCTGGTTGTTTCTGAAGGCTGGGCAAAGGTTAGGGAGCAGGGTCAGCAAAAAGGTGAAGCTAGTCCTTTTCTTGCTGAGC TCCTACGCCTTGAGGAGCAAGCAAAACAGCAGGGTCTGGGCAGATGGAGTAAGGCACCAGGAGCCTCAGAGGCATCGATCAGAAATCTACCCCCCTCTGC CATTGGTGATTCGAGTAATTTTGATGCTATGGGTCTGCTAGCTGCAAACAAGGGAACACCCATGGAATGCATTGTGGAGCAGGTTCGTGATGGCAGTACC ATCCGTGTCTACTTGCTTCCAGACTTTCAATTTGTTCAAGTGTTTGTTGCTGGAATACAGGCCCCATCAATGGGTAAAAGAGCTGCAATAGAAACTGTTG GTGAAACTGTAACAACCTCTAATGGAACAAATGGTGACACATCTGAAACTCGTGCCCCTTTAACATCTGCACAGAGACTTGCAGCCTCAGCAGCTCCTCC AGAAGTTGCTCCTGATCCATTTGGGATGGAAGCCAAATATTTTACAGAGCTACGTACTTTGAACAGGGATGTCCGCATTGTTCTGGAAGGTGTTGACAAG TTCAGCAATTTGATTGGATCAGTATACTATCCTGATGGGGAATCTGCAAAGGACTTGGCACTAGAGCTTGTTGAAAATGGTTTGGCAAAATTTGTTGAAT GGAGTGCAAACATGATGGAAGAAGATGCTAAACGGCAGCTGAAGACTGCAGAACTGCAAGCCAAAAAAAGTCGATTGAGGTTCTGGACTAATTATGTACC CCCTGCTACAAATTCAAAAGCAATCCATGATCAGAATTTTACTGGAAAGGTAGTGGAGGTTGTAAGTGGTGATTGTGTCATTGTGGCGGACGATTCTGTG CCTTATGGCAGTCCATTGGCAGAGAGACGAGTCAATCTTTCAAGCATTAGGTGTCCAAAAATGGGTAATCCTCGTAGAGATGAAAAACCTGCTCCTTATG CCCGGGAAGCTAAGGAGTTTTTGAGGACACGCCTTATTGGACGACAAGTGAATGTGAGAATGGAATATTCTAGGAAGATGACAGATGGACCCACAGCTGC CCCTGTTCCTGGAGATGCAAGAGTTATGGATTTTGGATCAATCTTTCTGCTGTCTCCCACTAAAGGTGATGAAGCCTCGACAGCTCCATCCACTGCTGCT GGCCAGCAACCTGGGATTAATGTTGCTGAGCTAGTGGTTTCTCGTGGCTTTGGCACTGTGATTCGGCATAGAGATTTTGAGGAAAGATCAAACTTTTATG ATGCCCTTCTTGCTGCTGAATCCAGAGCTATTGCTGGAAAGAAAGGGATTCATTCTGCAAAGGACCCTCCAGTCATGCATATTACAGACCTCACCACGTC ATCATCCAAGAAAGCAAAAGACTTCTTGCCATTCCTGCACAGAAGTAGGAGGATATCTGCTGTTGTTGAATACGTCCTTAGTGGTCATCGTTTTAAACTG TTGATTCCCAAGGAAACATGTAGCATTGCTTTCTCATTCTCTGGTGTTAGATGTCCTGGTCGTGATGAACCCTACTCAGAAGAAGCAATAGCTCTTATGA GACGAAAGATAATGCAGAGAGATGTTGAAATTGAAGTGGAAACTGTTGATAGAACCGGAACTTTCTTGGGATCCTTGTGGGAGTCAAGGACTAACATGGC AGTGACTCTTCTCGAAGCTGGCCTTGCAAGGTTTCAAACTTCCTTTGGCACTGATAGGATTCCTGATGCACATCTTCTTGAACAGGCTGAGCAATCCGCC AAGAGGCAGAAACTGAAGATTTGGGAGAATTATGTTGAAGGAGAGGAAATCAATAGTGGTCCTGTTGTTGAAAGCAAACAGAAAGAAGTGCTCAAGGTAG TGGTTACAGAAGTCTTGGATGGTGGTAGGTTCTATGTCCAGATAGTTGAGGATAAGAAAATAGCCTCTATTCAGCAACAGCTTGCCTCCCTCAATCTCCA AGAGGCTCCTGTAATTGGTGCTTTTAATCCCAAGAAGGGTGACATTGTGCTTGCTCAGTTTAGCGCAGATAATTCATGGAACCGAGCAATGATTGTGAAT GCACCTCGTGGAGGCGTTGAGTCTCCCAGGGACAAGTTTGAGGTGTTCTACATTGACTATGGCAATCAGGAGGAGGTTCCATACAGTCACATACGGCCTC TTGATCCATCAGTGTCAGCGGCACCCGGTCTTGCTCAGCTGTGCAGCTTAGCGTACATTAAAGTTCCAAGCTTGGAGGATGATTGTGGTCCAGAAGCAGC TCAGTATTTTAGTGATAACACATTAAACAGTTCAAAAGAGTTAAGGGCAAAGGTGGAAGAAAGGGATGCTTCTGGAGGGAAAGTTAAAGGCCAGGGAACT GGGCCAGTTGTTGTTGTAACTCTGGTCGCTGTTGATTCAGAGATCAGCTTAAATGCTGCCCTAGTTCAGGAAGGGCTTGCCAGGATAGAAAAGATGAGGA AGTGGGACTCGATGGAAAGGAAGGTGGCGCTAGAAAATTTGGAAAAATTCCAGGATGAAGCACGGGCTGATAGGCGTGGGCTGTGGGTGCATGGAGATAT CGAGTCAGATGACGAGGATGTCCTTCCTGTTAAGAAGACCGGTGGTCGTAGGTGA
AA sequence Show only first row Show all	>Potri.015G109300.1 pacid=42775676 polypeptide=Potri.015G109300.1.p locus=Potri.015G109300 ID=Potri.015G109300.1.v4.1 annot-version=v4.1 MATSTAGATGWYRGKVKAVPSGDSLVIMAMTSSKPGPPPEKTITLSSLIAPRLARRGGVDEPFAWNSREYLRKLCIGKEVTFKVDYAVPSIGREFGSVFL GEKNVALLVVSEGWAKVREQGQQKGEASPFLAELLRLEEQAKQQGLGRWSKAPGASEASIRNLPPSAIGDSSNFDAMGLLAANKGTPMECIVEQVRDGST IRVYLLPDFQFVQVFVAGIQAPSMGKRAAIETVGETVTTSNGTNGDTSETRAPLTSAQRLAASAAPPEVAPDPFGMEAKYFTELRTLNRDVRIVLEGVDK FSNLIGSVYYPDGESAKDLALELVENGLAKFVEWSANMMEEDAKRQLKTAELQAKKSRLRFWTNYVPPATNSKAIHDQNFTGKVVEVVSGDCVIVADDSV PYGSPLAERRVNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVRMEYSRKMTDGPTAAPVPGDARVMDFGSIFLLSPTKGDEASTAPSTAA GQQPGINVAELVVSRGFGTVIRHRDFEERSNFYDALLAAESRAIAGKKGIHSAKDPPVMHITDLTTSSSKKAKDFLPFLHRSRRISAVVEYVLSGHRFKL LIPKETCSIAFSFSGVRCPGRDEPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGLARFQTSFGTDRIPDAHLLEQAEQSA KRQKLKIWENYVEGEEINSGPVVESKQKEVLKVVVTEVLDGGRFYVQIVEDKKIASIQQQLASLNLQEAPVIGAFNPKKGDIVLAQFSADNSWNRAMIVN APRGGVESPRDKFEVFYIDYGNQEEVPYSHIRPLDPSVSAAPGLAQLCSLAYIKVPSLEDDCGPEAAQYFSDNTLNSSKELRAKVEERDASGGKVKGQGT GPVVVVTLVAVDSEISLNAALVQEGLARIEKMRKWDSMERKVALENLEKFQDEARADRRGLWVHGDIESDDEDVLPVKKTGGRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Potri.015G109300 [exp]	0	1	Pt-SN4.1
AT1G23170			Protein of unknown function DU...		Potri.008G131800 [exp]	1.73	0.9137
AT1G23170			Protein of unknown function DU...		Potri.010G110500 [exp]	15.23	0.8082
AT2G47510		FUM1	fumarase 1 (.1.2)		Potri.002G201300 [exp]	22.04	0.8418	FUM1.1
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.014G149600 [exp]	29.08	0.8333
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	29.44	0.8455
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.006G076600 [exp]	33.94	0.7893
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.002G135300 [exp]	34.56	0.8425
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	40.34	0.8139
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	65.57	0.7524
AT5G60390			GTP binding Elongation factor ...		Potri.008G043100 [exp]	76.36	0.8115	ADR12.3

Compare expression of checked genes

Potri.015G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.