Plant FIBer expression Database

Potri.015G109500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61760 394 / 2e-138 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
AT5G07370 386 / 2e-135 ATIPK2A, IPK2a inositol polyphosphate kinase 2 alpha (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G111400
[exp]
551 / 0 AT5G61760 404 / 1e-142 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020535
[exp]
437 / 4e-155 AT5G61760 354 / 6e-123 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Lus10009385
[exp]
434 / 5e-154 AT5G61760 350 / 8e-122 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Lus10020534
[exp]
320 / 4e-100 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10009397
[exp]
0 / 1 AT5G07370 96 / 3e-25 inositol polyphosphate kinase 2 alpha (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF03770 IPK Inositol polyphosphate kinase
Representative CDS sequence
>Potri.015G109500.3 pacid=42775702 polypeptide=Potri.015G109500.3.p locus=Potri.015G109500 ID=Potri.015G109500.3.v4.1 annot-version=v4.1
ATGCTTAAGGTCCCTGATCATCAGGTTGCGGGCCACCAAGCTCGTAATGGGCAGCTTGGCCCCCTCATTGATGATTCGGGGCGTTTCTACAAGCCTCTCC
AGGATGATGACCGGGGCTCGAAAGAGGTGGCTTTTTACTCCTCCTTCTCGTCGAATACGAGGGTCCCAGATCATATCCGAAGACTCTTTCCTGTTTTTCA
TGGGACTCAGCTCTTAGAGGCGTCTGACGGGTCTGGCCTGCGGCCGCACCTTGTATTGGAGGATGTTGTTTCAAGTCGTTCGCATCCATCGGTTATGGAT
ATCAAGATTGGTTCTAGGACTTGGTATCCTGAAGCTTCTGAGGATTATATCCAGCGGTGCTTTAAGAAAGATAGGGAAACTAGTAGTTTGTCTTTGGGTT
TTAGGATTTCTGGGCTGCAGATTTATGGAAATGAAGAATCTGGATTTTGGAAGCCTGAGAGGAAACTTGTTCAGAATCTCAGTGCAGCTGATGTTAGAGT
GGTTCTGAAGAAGTTTGTTTCTTCCAATTTGCCGGTTGATCCAAATTCAGACCCTGATTGTTCTTTTGCGGCAAGTGTTTATGGCGGTTCTACTGGGATT
TTGGCTCAATTATTGGAGCTAAAGGCATGGTTTGAGGATCAAACCATGTACCATTTGAATTCTTGTTCAGTTCTCTTGGTGTATGAGAAGGAGAAAGTGT
TAAAAGGAGAGAGGTCAGATGCTGAAGTTAAACTTATTGACTTTGCTCATGTTACAGAAGGCAAAGACATTATTGATCATAATTTCTTGGGTGGGCTTTG
CTCCTTGATAAAGTTCATCTCGGAGATTCTTACCAGTCCCGATGAGTGCACAACCAAAGCTTGTTTGCGGGACTCTGAGAGGGACAAGGAGATTCTTACC
AGTCCCGATGAGTGCACAACCAAAGTTTGTTTGCAAGACTCTGACAAGAACACCAATTATTCTGAAAACGGTACCATTGAAGGAATGTAG
AA sequence
>Potri.015G109500.3 pacid=42775702 polypeptide=Potri.015G109500.3.p locus=Potri.015G109500 ID=Potri.015G109500.3.v4.1 annot-version=v4.1
MLKVPDHQVAGHQARNGQLGPLIDDSGRFYKPLQDDDRGSKEVAFYSSFSSNTRVPDHIRRLFPVFHGTQLLEASDGSGLRPHLVLEDVVSSRSHPSVMD
IKIGSRTWYPEASEDYIQRCFKKDRETSSLSLGFRISGLQIYGNEESGFWKPERKLVQNLSAADVRVVLKKFVSSNLPVDPNSDPDCSFAASVYGGSTGI
LAQLLELKAWFEDQTMYHLNSCSVLLVYEKEKVLKGERSDAEVKLIDFAHVTEGKDIIDHNFLGGLCSLIKFISEILTSPDECTTKACLRDSERDKEILT
SPDECTTKVCLQDSDKNTNYSENGTIEGM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61760 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL ... Potri.015G109500
[exp]
0 1
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Potri.011G031000
[exp]
3.87 0.7946
AT3G54110 ATUCP1, UCP1, U... ARABIDOPSIS THALIANA UNCOUPLIN... Potri.006G095500
[exp]
5.29 0.7887 UCP2.2
AT3G15810 Protein of unknown function (D... Potri.003G032500
[exp]
6.00 0.7495
Potri.018G142201
[exp]
17.43 0.7059
AT1G03670 ankyrin repeat family protein ... Potri.019G101700
[exp]
17.43 0.7939
Potri.002G206700
[exp]
23.10 0.7928
AT5G65550 UDP-Glycosyltransferase superf... Potri.008G024900
[exp]
26.49 0.7376
AT1G19250 FMO1 flavin-dependent monooxygenase... Potri.006G060200
[exp]
28.49 0.7179
AT5G10980 Histone superfamily protein (.... Potri.002G100200
[exp]
29.29 0.6762
AT1G75710 C2H2ZnF C2H2-like zinc finger protein ... Potri.002G087500
[exp]
34.59 0.7711

Potri.015G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.