Plant FIBer expression Database

Potri.015G109700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07380 638 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032518
[exp]
535 / 0 AT5G07380 455 / 6e-151 unknown protein
Lus10043018
[exp]
432 / 7e-144 AT5G07380 392 / 2e-128 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G109700.3 pacid=42776543 polypeptide=Potri.015G109700.3.p locus=Potri.015G109700 ID=Potri.015G109700.3.v4.1 annot-version=v4.1
ATGGTACTTGTTTGCTTCGTGCTAGATCTCTGCAACCTCTCGCCTCCATTGCTCAAAAACCTAAAACAATCCTTGCTACACCTCGCAAATTTCTACGCCG
TATCGTCTCCTTCACGCCGCCAATCGCACTCTCTCATTGACAAAATCGGCTTGTGTTATCTCTTAAAACACCGCACTTCTCTCTCTCACGAGCTAAAGAT
CGGTTATAGTCCTAGAGGAAATTTCAATCTCCGTGACTTCCATCACGCCGTTAATAATGTGCCTACCGATTCCTTTTTGCCTGAAATTAACGATTCTGGA
AGTCTCCGTTCATTCGATGTAAAGCTTTCAAGTATTTTGAGCGATCAAGTACTGTACTCATGGGGAGGTAAAGATATTATGAGGAAAGTGATTGTTTTGA
GCTCGTGCGTGCCTGATAATATCGACACTGAGTTGAAATTGACTCTCATGGATGCAGCGGATAAGTGTGTTTCGGTGGAGTTTGTGTTGTTTGAGCAAAG
TTCGAGTCATCTTGGAAATTTTCAGGAGAATATTAATTCTTTCATGAGAAGTATATCAGATCTTGATAATTTCTCATTCGGAACTTATCTCGCAGATAGT
AGAGTTTTTCATAGCTTGGTAAAACGATGGCTACAGGAGTTAAAGGATGACATGGAAGAACCATTGCAAGCTCGTTTTATCTTTAAAAGCAACCTCACAG
GCTCTTTGAATCAGATATTCTGCAGCTTGTCAACATCTGTTTGTCAAATTATTGATGGATTCAGTGCTTGCGAGACATGCAGGTGTCATGGCTCTGTGTT
AGATAACAGAATAAAAGACAAAAATGTCGGAGCTTCTTGTCCAATCACAGGGCGTGATCTAGAAATTTCCGATGTCATTGAAAATTCTGTGCAAGTTGGA
GACAAAACAGTTCTGTTCATGCCCTCTTTTCAGAGCTCTATGAAGCTGAAGCAAGTTTCTTCACCCATAGACTTCAACATTATTGAGAGGGCTAACCTGA
GCTCCTTAAGTGAAGGTCTTATAATTGGATCTTCATATTTTGTAACTCCATCAGCTTGTTATGAGATAGAAACTTCAGATGAAATGGACCGACCAGAGTT
GAATGCTCAAATTTTTCAAGGGATTTGCAGTGTTCTGCATTCAATGGATCAGGGCCTGTTATGCTCTTCGTGTTGTAATGTAGAAACCATGAGAGAAGCA
GCCTTCCACTGCTACTATCTTCTTCAGCCTTCAGACAATGGGCCAATGCTTCTCAGGCGGCTTGCAGGATCAGAGGAAGTTTTGCCTGTGCCTGATGCCA
ATCGATTCCTTGATTCTCCTGTAAATAAGGAGATTCAGAATTCCATTCAAGCCTCTCTAATGAAGATGGAACTAAGAGACTACAATCCAGTAATACACGA
GAGAGGATTCCATCAAAAGCTCAACTTGCTTGTGAAAGAGAGCCTACAATTTGGGCCACTTCCTCCTAAACTGGATGAGACAACATCCGAACTAAACTCA
AACGAACCAGATTCTTCAGAAGTCATTGTCCTAGATGCTATAGACTTGGAGGATGAAACGCCACTGCTGGATCTGACAAATAGAGATGACAAAACCACTG
CTTCTATTGCAGAGGAATGGGAGCAGCTGGTTGTCAAGGAAGTTCCCAAGACATTTTCTCCCACTTGTGTTTCCAAACCTAAGATGGACCAGTCCGTTCT
GTCCTCACCAGACAGCAACAGGCAGCTGGATGCAAAAACTTCTAGGATACTAGAGAGGCTGGAGTTGCCGAGACAGTTAAAATCTAAGACAGTTTCTCCC
ACTATCATAAGCAGTCAAACACCTGTGCGAACAAAAAAGCCTCTGATCCCATTCCAGCCCACCAATGCAATAAACCAAAGCCCGACTTCAAGCCAGTTAC
TGAAGCCCAACTTCCAGAGGCTCAAAAGGAAACATAAATGA
AA sequence
>Potri.015G109700.3 pacid=42776543 polypeptide=Potri.015G109700.3.p locus=Potri.015G109700 ID=Potri.015G109700.3.v4.1 annot-version=v4.1
MVLVCFVLDLCNLSPPLLKNLKQSLLHLANFYAVSSPSRRQSHSLIDKIGLCYLLKHRTSLSHELKIGYSPRGNFNLRDFHHAVNNVPTDSFLPEINDSG
SLRSFDVKLSSILSDQVLYSWGGKDIMRKVIVLSSCVPDNIDTELKLTLMDAADKCVSVEFVLFEQSSSHLGNFQENINSFMRSISDLDNFSFGTYLADS
RVFHSLVKRWLQELKDDMEEPLQARFIFKSNLTGSLNQIFCSLSTSVCQIIDGFSACETCRCHGSVLDNRIKDKNVGASCPITGRDLEISDVIENSVQVG
DKTVLFMPSFQSSMKLKQVSSPIDFNIIERANLSSLSEGLIIGSSYFVTPSACYEIETSDEMDRPELNAQIFQGICSVLHSMDQGLLCSSCCNVETMREA
AFHCYYLLQPSDNGPMLLRRLAGSEEVLPVPDANRFLDSPVNKEIQNSIQASLMKMELRDYNPVIHERGFHQKLNLLVKESLQFGPLPPKLDETTSELNS
NEPDSSEVIVLDAIDLEDETPLLDLTNRDDKTTASIAEEWEQLVVKEVPKTFSPTCVSKPKMDQSVLSSPDSNRQLDAKTSRILERLELPRQLKSKTVSP
TIISSQTPVRTKKPLIPFQPTNAINQSPTSSQLLKPNFQRLKRKHK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G07380 unknown protein Potri.015G109700
[exp]
0 1
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.006G072200
[exp]
2.00 0.7075
AT5G07810 SNF2 domain-containing protein... Potri.012G067000
[exp]
3.00 0.7511 CHR919
AT3G21620 ERD (early-responsive to dehyd... Potri.014G156100
[exp]
6.24 0.6752
AT1G35530 DEAD/DEAH box RNA helicase fam... Potri.013G109600
[exp]
12.64 0.6818
AT2G16650 PRORP2 proteinaceous RNase P 2 (.1) Potri.004G185200
[exp]
17.32 0.7503
AT5G20540 ATBRXL4, BRX-LI... BREVIS RADIX-like 4 (.1) Potri.006G144900
[exp]
21.63 0.6757
AT1G14610 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2,... Potri.007G004100
[exp]
25.09 0.6806 Pt-VALRS.2
AT4G22970 RSW4, AESP RADIALLY SWOLLEN 4, homolog of... Potri.003G021700
[exp]
30.57 0.6980
AT5G49110 unknown protein Potri.010G011800
[exp]
38.02 0.6962
AT1G77320 MEI1 meiosis defective 1, transcrip... Potri.005G182500
[exp]
40.98 0.6403

Potri.015G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.