Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHD2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51060 1253 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G47910 1217 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G07390 1114 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 1050 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 988 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 948 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G19230 826 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 802 / 0 Riboflavin synthase-like superfamily protein (.1) AT5G60010 763 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 726 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111600 [exp] 1709 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 1290 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 1247 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 1152 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 976 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 967 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 863 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 746 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 725 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022434 [exp] 1452 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10043017 [exp] 1449 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 1440 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10029896 [exp] 1146 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 1014 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10032308 [exp] 961 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 931 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 912 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 863 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 850 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01794 [poplar] [flax] Ferric_reduct Ferric reductase like transmembrane component CL0076 [poplar] [flax] FAD_Lum_binding PF08022 [poplar] [flax] FAD_binding_8 FAD-binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF08030 [poplar] [flax] NAD_binding_6 Ferric reductase NAD binding domain CL0220 [poplar] [flax] EF_hand PF08414 [poplar] [flax] NADPH_Ox Respiratory burst NADPH oxidase
Representative CDS sequence Show only first row Show all	>Potri.015G109800.2 pacid=42775445 polypeptide=Potri.015G109800.2.p locus=Potri.015G109800 ID=Potri.015G109800.2.v4.1 annot-version=v4.1 ATGCAAGATACGGGTAGAGAAGATCATCACTCTGACACAGAGCTATCGGGGAGCGAAAGGGTAGCTTACAGTGGTCCATTGAGCGGACCTCTGAATAAAA GACCTGGAAAAAAGAGTGCGAGGTTTAATATACCAGAAACAACCACATCCAAGGATGAACAATACGTGGAGATCACTCTTGATGTCCGAAATGATTCTGT GGCTGTACACAGCGTTAAACCTTCTCATGGCGTCAAAGAAGATCCTGAGATGACATTACTTGCTAAAGGTCCAGATAAAAGATCTGTTTCCAATGTTGTG AGAACTGCTTCAGCAAGAATTAGACAGGTTTCTCATGAAATAAAACGGTTGGCTTCGTTCTCAAAGAGGCCTCCTCCTGGTCGCCTTGACAGGTCTAAAT CTGCAGCTGCTCATGCTTTAAAAGGACTAAAGTTTATCAGCAAGACTGATGGTGGTGCAGGATGGGCTGCTGTGGAAAAGCGTTTCGATGAAATTACTGC TTCTACTGAGGGCTTGCTCCCTCGTGCGCGATTCTGTGAATGTATAGGAATGAAGGAGTCAAAGGAGTTTGCAGGAGAGCTGTTCAGTTCACTTGCAAGG AAGCGGAATATACAATGTGATTCGATCAACAAAGCTGAGCTGAGGGAATTCTGGGAACAGATTTCCAACCAAAGTTTCGACTCCAGGCTCCAAACTTTCT TTGACATGGTGGATAAAGATGCTGATGGCAGAATCACAGAAGAGGAAGTCAGAGAGATCATTACCCTTAGCGCTTCTGCAAATAAACTGTCAAATATCCA GAAACAAGCTGAGGAATATGCAGCATTAATCATGGAAGAGTTAGATCCAGAAAATCATGGATACATCATGATAGAGAACCTGGAAATGCTTCTATTGCAA GGACCAAGCCAGTCGGCAGGAGGAGAAAGCCGAAATCTGAGCCGTATGCTAAGCCAGAAGCTTAAGCCTACATTGGATAGCAACCCATTAAACAGATGGG GCAGAGGCACCAGGTATTTCTTATTAGACAACTGGCAGAGAGTTTGGGTAATGGCTCTATGGATTGCTGTTATGGCTAGCCTATTTGCATACAAGTATGT GCAGTATCGACGCAGAGCGGCGTATGTGGTGATGGGTCATTGTGTATGCATGGCCAAGGGTGCAGCTGAGACACTCAAACTGAATATGGCTCTAATTCTA CTACCTGTCTGCCGAAACACTCTCACCTGGCTCAGGAACAAAACCAAATTAGGTGTCGCGGTTCCTTTTGACGACAACCTCAATTTCCACAAGGTTATAG CAGTTGGAGTTGCAGTTGGAGTTGGTATCCATGGGATTTCTCATCTAGCGTGTGACTTCCCTCGCCTTCTTCGTGCAAGTGAAGAAAAGTGGGAGCTCAT GCAGCAATTTTTCGGGGATCAACCTTCAAGTTACTGGCATTTTGTCAAGTCCAAGGAAGGAGTAACTGGGATCCTCATGGTAGTGTTGATGGCTATAGCC TTCACACTAGCCACCCCTTGGTTCAGACGTAATAAGCTCAATTTGCCGACATGGCTCAAGAAGCTCACCGGTTTCAATGCATTTTGGTATTCTCACCATC TCTTCGTCATCGTCTACACCCTGCTCATCGTGCACGGTTATTACCTCTACCTGACTCATGAATGGTACAAGAAGACGACCTGGATGTACTTGACAGTTCC TGTTATGCTTTACGGGGGTGAAAGATTCATTAGGGCACTGAGATCAAGCATCAAGGCTGTTACCATACAAAAAGTGGCAATTTATCCTGGAAATGTCCTG GCACTTCACATGTCAAAGCCTCAAGGATTTAGATACAAGAGTGGGCAATACATGTTTGTCAATTGTTCTGCTGTCTCTCCATTCGAATGGCACCCATTTT CTATTACTTCAGCCCCTGGAGATGACTACCTTAGTGTTCATATCAGAACTCTTGGTGATTGGACACTGCAGCTTCGAACAGTGTTCTCAGAGGCATGCCA ACCACCTCCTAATGGGAAGAGTGGACTTCTCAGAGCTGACTGCTTCCAAGGACACAGCCCAAATTTCCCAAGAGTCTTGATTGACGGTCCATATGGAGCA CCAGCACAAGACTACAAGAAATATGAGGTGTTATTGCTCGTTGGCCTAGGAATTGGAGCAACCCCAATGATCAGCATTGTCAAGGACATAGCGAGTAACA TCAGGGCCATGGAGGAAGAAGAGAAAGCATTAGAAAATGGTACTGATGGGGCAGGCAATAGCCCGTTAACTAGAACTCCAAGCCCTAATGCACACAAAAG AAAAGAAAGCTTCAAGACAAGGAGAGCATACTTCTATTGGGTGACAAGAGAACAAGGTTCCTTTGACTGGTTTAAAGGGGTTATGAATGAAGTGGCTGAA TTAGACCATAACCATGTCATAGAGCTTCACAACTACTGTACTAGTGTTTATGAAGAGGGTGATGCAAGGTCTGCTCTAATTGCCATGCTTCAATCCATTA ATCATGCCAAGAATGGTGTGGACATTGTCTCTGGCACACGAGTCAAGTCTCACTTCGCCAAGCCTGATTGGCGTAATGTCTACAAGCGCACTGCGCTTAA CCACCCTGATTCTCGGGTTGGAGTGTTTTATTGTGGGGCACCAGCTTTGACAAAAGAGCTGCGCCAGCTAGCCTTGGATTTCTCTCACAAGACCAGCACT AAGTTTGATTTTCACAAAGAAAACTTCTAA
AA sequence Show only first row Show all	>Potri.015G109800.2 pacid=42775445 polypeptide=Potri.015G109800.2.p locus=Potri.015G109800 ID=Potri.015G109800.2.v4.1 annot-version=v4.1 MQDTGREDHHSDTELSGSERVAYSGPLSGPLNKRPGKKSARFNIPETTTSKDEQYVEITLDVRNDSVAVHSVKPSHGVKEDPEMTLLAKGPDKRSVSNVV RTASARIRQVSHEIKRLASFSKRPPPGRLDRSKSAAAHALKGLKFISKTDGGAGWAAVEKRFDEITASTEGLLPRARFCECIGMKESKEFAGELFSSLAR KRNIQCDSINKAELREFWEQISNQSFDSRLQTFFDMVDKDADGRITEEEVREIITLSASANKLSNIQKQAEEYAALIMEELDPENHGYIMIENLEMLLLQ GPSQSAGGESRNLSRMLSQKLKPTLDSNPLNRWGRGTRYFLLDNWQRVWVMALWIAVMASLFAYKYVQYRRRAAYVVMGHCVCMAKGAAETLKLNMALIL LPVCRNTLTWLRNKTKLGVAVPFDDNLNFHKVIAVGVAVGVGIHGISHLACDFPRLLRASEEKWELMQQFFGDQPSSYWHFVKSKEGVTGILMVVLMAIA FTLATPWFRRNKLNLPTWLKKLTGFNAFWYSHHLFVIVYTLLIVHGYYLYLTHEWYKKTTWMYLTVPVMLYGGERFIRALRSSIKAVTIQKVAIYPGNVL ALHMSKPQGFRYKSGQYMFVNCSAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTLQLRTVFSEACQPPPNGKSGLLRADCFQGHSPNFPRVLIDGPYGA PAQDYKKYEVLLLVGLGIGATPMISIVKDIASNIRAMEEEEKALENGTDGAGNSPLTRTPSPNAHKRKESFKTRRAYFYWVTREQGSFDWFKGVMNEVAE LDHNHVIELHNYCTSVYEEGDARSALIAMLQSINHAKNGVDIVSGTRVKSHFAKPDWRNVYKRTALNHPDSRVGVFYCGAPALTKELRQLALDFSHKTST KFDFHKENF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	0	1	RHD2.2
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	1.00	0.8953
AT1G61740			Sulfite exporter TauE/SafE fam...		Potri.011G030900 [exp]	2.23	0.8554
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	2.82	0.8640
AT2G15780			Cupredoxin superfamily protein...		Potri.009G106000 [exp]	4.89	0.8831
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.010G006800 [exp]	6.92	0.7819	RAP2.3,ERF34
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	7.93	0.8659
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Potri.010G131900 [exp]	8.66	0.7312
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	9.48	0.7875
AT3G51750			unknown protein		Potri.016G124000 [exp]	9.48	0.7757
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.019G083000 [exp]	12.64	0.8040

Compare expression of checked genes

Potri.015G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.