Plant FIBer expression Database

Potri.015G110132 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G175200
[exp]
52 / 6e-07 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1)
Potri.002G239900
[exp]
45 / 7e-05 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043012
[exp]
179 / 7e-51 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Lus10032514
[exp]
173 / 2e-47 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Lus10022433
[exp]
122 / 2e-30 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Lus10016738
[exp]
118 / 5e-29 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Lus10032466
[exp]
47 / 1e-05 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1)
Lus10042965
[exp]
45 / 8e-05 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1)
Lus10002146
[exp]
43 / 0.0003 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1)
Lus10008744
[exp]
43 / 0.0004 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07899 Frigida Frigida-like protein
Representative CDS sequence
>Potri.015G110132.1 pacid=42775968 polypeptide=Potri.015G110132.1.p locus=Potri.015G110132 ID=Potri.015G110132.1.v4.1 annot-version=v4.1
ATGATGAAGAAAGGAATGAAAATTGAAGCCGTTGATGTGGCTTGTATATTTGGAATCGAGGACAAGTTTCCTGCTCAGAATCTATTGACTTTAATTTTGC
AAGAGTCTAGAGAACCATTGAAGGGTAGAAAAAGAAAAGCAAATAATTCACCTGCAATACAGTTAGAGAAAGAGGCAAAGGAAAAGCAATTGATTGCTCT
GAAATCTGTGGTGAAGTTTCTTGAAGAACACCAGCTTGACCCCACAAAGCTTCTTCCTGGTTGGCAACTTGAAGATAAGACAACAGAGCTGGAGAAAGAT
ATTGCTGATCTGAATAAAAAAATAGGCAAGCTGCCTTTGTCAAAGAGACCGGAAAATGTGAATGAGGTGACAAATTACTGGAAGAGTCAAGAAATAAAAC
GTCGACGACTTGCAGAGAAAGGTTCACCCCTGGTCTCTCCAGGTGTGAGGTTGCCTGATCAAATAGCTGCTAGCTACATGAATGGACAGAGCTCATATAA
CAGTGTGATGCGACTGAATGGTGGATTCCCTGGTCATGTCAACAACTATCCTGCTGGCACATCTGCTATGTATGGATCTAGTATAGGGCCTTTTCCTGAA
AATGTTCTGGGCACATCAGCAAGTGGAATTGGTCTGTCAGCTGCATATGGTGGATCTGCTGGAGTTCACAGGGATATGCTAGTTGATGGGACAAGGCAGA
TAAAAGGTGGCAATGTTCCACAATATGCATGGCATAGGGCTGGGGATACTGCCCTAAATGATGGGTCAGTGGGACATTGGCATCCTGCATCTGGTTTGTT
TGGACAATCATCCTCAATAGAAGGCTTTGGAGGTTTGCTGAATTCCCCACCTGCTGTTGCTGCTAATGGAAGCTCAGCCCCAGACCTGTATGGGTTTGCT
GATGCTCCCTCTCTCGCTGCTAAGCAGGGTGCAGCCTCAGATCTTTATGGGTTTGCTGATGCTCCTACTGTCACCGCTAGTCAGACTGCAGCCTCCAATC
TCTACAGGTTCCCTGGTGCAGTTGCATATGGCAGTACTCGGCATACTGGTCCATTGCCTCGTGGCTTGGGATCCCACCATTCATCTTACATGCGTTAA
AA sequence
>Potri.015G110132.1 pacid=42775968 polypeptide=Potri.015G110132.1.p locus=Potri.015G110132 ID=Potri.015G110132.1.v4.1 annot-version=v4.1
MMKKGMKIEAVDVACIFGIEDKFPAQNLLTLILQESREPLKGRKRKANNSPAIQLEKEAKEKQLIALKSVVKFLEEHQLDPTKLLPGWQLEDKTTELEKD
IADLNKKIGKLPLSKRPENVNEVTNYWKSQEIKRRRLAEKGSPLVSPGVRLPDQIAASYMNGQSSYNSVMRLNGGFPGHVNNYPAGTSAMYGSSIGPFPE
NVLGTSASGIGLSAAYGGSAGVHRDMLVDGTRQIKGGNVPQYAWHRAGDTALNDGSVGHWHPASGLFGQSSSIEGFGGLLNSPPAVAANGSSAPDLYGFA
DAPSLAAKQGAASDLYGFADAPTVTASQTAASNLYRFPGAVAYGSTRHTGPLPRGLGSHHSSYMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48385 FRIGIDA-like protein (.1) Potri.015G110132
[exp]
0 1
AT1G74120 Mitochondrial transcription te... Potri.018G051600
[exp]
1.41 0.9133
AT2G32630 Pentatricopeptide repeat (PPR-... Potri.003G008900
[exp]
6.24 0.9054
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Potri.010G189700
[exp]
6.32 0.8938
AT5G13950 unknown protein Potri.002G237800
[exp]
7.48 0.8969
AT3G50910 unknown protein Potri.005G120600
[exp]
9.16 0.8856
AT5G05550 Trihelix sequence-specific DNA binding ... Potri.010G186200
[exp]
10.19 0.8825
AT2G37035 unknown protein Potri.016G091400
[exp]
12.64 0.8623
AT1G80150 Tetratricopeptide repeat (TPR)... Potri.001G171300
[exp]
14.00 0.8770
AT5G18390 Pentatricopeptide repeat (PPR)... Potri.019G025700
[exp]
17.54 0.8849
AT5G64930 HYS1, CPR5 HYPERSENESCENCE 1, CONSTITUTIV... Potri.007G082100
[exp]
19.89 0.8608

Potri.015G110132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.