Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22410 340 / 8e-117 RHS18 root hair specific 18 (.1) AT5G17820 290 / 2e-97 Peroxidase superfamily protein (.1) AT4G26010 273 / 9e-91 Peroxidase superfamily protein (.1) AT3G03670 267 / 4e-88 Peroxidase superfamily protein (.1) AT5G24070 263 / 3e-86 Peroxidase superfamily protein (.1) AT5G64120 256 / 1e-83 Peroxidase superfamily protein (.1) AT5G64100 251 / 1e-81 Peroxidase superfamily protein (.1) AT1G34510 248 / 9e-81 Peroxidase superfamily protein (.1) AT2G43480 246 / 6e-80 Peroxidase superfamily protein (.1) AT5G64110 244 / 4e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218450 [exp] 322 / 3e-109 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 322 / 3e-109 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.013G066800 [exp] 278 / 6e-92 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 258 / 1e-84 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.007G132800 [exp] 255 / 3e-83 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 253 / 7e-83 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 253 / 9e-83 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 251 / 7e-82 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 247 / 2e-80 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043010 [exp] 464 / 1e-165 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10032511 [exp] 464 / 1e-165 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10004859 [exp] 378 / 7e-132 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10005679 [exp] 286 / 1e-95 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10018375 [exp] 277 / 6e-92 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10013631 [exp] 274 / 1e-90 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 270 / 3e-89 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10020312 [exp] 275 / 1e-85 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10004804 [exp] 260 / 5e-85 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1) Lus10012684 [exp] 254 / 5e-83 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.015G110200.1 pacid=42775561 polypeptide=Potri.015G110200.1.p locus=Potri.015G110200 ID=Potri.015G110200.1.v4.1 annot-version=v4.1 ATGAAGGCTGAGGCAGCATTTCTGACATTAGCCCTTGGGTTCATTTCAGTGAACTTTACTGGCTTCTGCTTTGGTGCACTGCAAGTGGGATTTTACAGAG GAAAATGTGGTTTTGCAGATGTTGAGGCTATAGTGGCTGGAGTTATTACTGCTCAGTTCTTCAGGGATCCTTCAACTGTGGCTGCCCTCTTACGCTTGCA GTTCCATGACTGCTTTGTCAATGGGTGTGATGCATCAATACTAGTGGATGGAAGTAACAGTGAGAAAACAGCAATACCGAATTTGAGTGTGAGGGGATAT GAAATTATAGACCAAGCAAAGGCTGCTGTGGAAAATGCTTGCCCTGGTGTGGTCTCCTGTGCTGATGTCATTGCAATAGCTACAAGAGATGTTGTTTTCT TGAGTGGTGGAGGGAGATACGATGTTCAAACAGGAAGAAGGGATGGTTTAGTCTCTGCAGCTAAAAATGTGAGCCTGCCAGGTCCTGCAATATCAGTGCC CGAGGCCATTGCAGCATTTTCTGATAAAGGTCTCACTGTTACAGAAATGGTGCTCCTACTAGGTGCTCATTCTGTTGGGATTGCACATTGCTCATTCATC AAAGACCGTCTTTTCAACTTTGAAAACACTGGCAGACCTGATCCATCCATGGATCCTTCCCTAGAAAACATTCTGAGATCAAGGTGCCCTCCATTTGCCA CAGTAGACAACACAGTGAACCTTGATCAAAACTCATTTAGCCCATTTACAATAAGCAATACATACTATCAGACTGTGATGCTGCATAGAGGCATTCTCCA AATCGACCAAGATTTAGGAACTGACCCCTTGACAATGCCTGTAGTGAAAAACCTGGCAAATGCGTTTGATTTCCCTGCCAGGTTTGGTGCTGCCATGGTT AAGTTGGGAGCTATAGGGGTTCTGACTGGCACACAAGGAGAAATTAGGAGATCTTGTAGGGCCACTAATAGGTAG
AA sequence Show only first row Show all	>Potri.015G110200.1 pacid=42775561 polypeptide=Potri.015G110200.1.p locus=Potri.015G110200 ID=Potri.015G110200.1.v4.1 annot-version=v4.1 MKAEAAFLTLALGFISVNFTGFCFGALQVGFYRGKCGFADVEAIVAGVITAQFFRDPSTVAALLRLQFHDCFVNGCDASILVDGSNSEKTAIPNLSVRGY EIIDQAKAAVENACPGVVSCADVIAIATRDVVFLSGGGRYDVQTGRRDGLVSAAKNVSLPGPAISVPEAIAAFSDKGLTVTEMVLLLGAHSVGIAHCSFI KDRLFNFENTGRPDPSMDPSLENILRSRCPPFATVDNTVNLDQNSFSPFTISNTYYQTVMLHRGILQIDQDLGTDPLTMPVVKNLANAFDFPARFGAAMV KLGAIGVLTGTQGEIRRSCRATNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.015G110200 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.007G119400 [exp]	10.14	0.7538
AT4G35160			O-methyltransferase family pro...		Potri.019G093000 [exp]	18.92	0.7501
					Potri.003G109601 [exp]	18.97	0.7392
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.018G049000 [exp]	23.21	0.6705	MYB178
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G025100 [exp]	43.95	0.7224
AT3G19430			late embryogenesis abundant pr...		Potri.009G097400 [exp]	44.11	0.7201
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	84.85	0.6592
					Potri.007G081650 [exp]	93.10	0.6730
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.005G223200 [exp]	104.91	0.6533
					Potri.004G036375 [exp]	150.49	0.6090

Compare expression of checked genes

Potri.015G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.