Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 363 / 5e-122 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 361 / 3e-121 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27080 361 / 4e-121 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G26900 355 / 4e-119 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 352 / 4e-118 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 310 / 5e-101 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G13840 305 / 6e-99 FZR3 FIZZY-related 3 (.1.2) AT4G11920 301 / 2e-97 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G27945 293 / 7e-95 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 75 / 4e-14 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048900 [exp] 371 / 5e-125 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 368 / 5e-124 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 367 / 2e-123 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 366 / 4e-123 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 301 / 2e-97 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 295 / 6e-95 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 294 / 2e-94 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 287 / 8e-92 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G089000 [exp] 86 / 2e-20 AT5G27570 62 / 2e-12 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043009 [exp] 602 / 0 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037593 [exp] 371 / 3e-125 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 370 / 9e-125 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 372 / 1e-120 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 346 / 2e-115 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 321 / 9e-101 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 299 / 8e-98 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 300 / 8e-94 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10001192 [exp] 292 / 2e-93 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10024482 [exp] 291 / 4e-93 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G110300.1 pacid=42775578 polypeptide=Potri.015G110300.1.p locus=Potri.015G110300 ID=Potri.015G110300.1.v4.1 annot-version=v4.1 ATGGATCAAAGCAAGAAGAGAGTAGTTCAACTTCAACCTGATTGGTTCTCTCCAAGAAGATTACATGACAGCCCCACTCAATACGAATTTCCAGGCGATA GGTTTATACCAAACAGGAGTTTGATGAATCTTGATCAAGCCCACTGTTTGTTGACAAACAAAATCAAAGAAGTACACAATCCCAATTTCGGTAAAGGATA CAGAGAAATGTTGAGGGAAAGTCTAACTTTGGACTCAGAAGGGAGACCATTTAGGATGTTGGTTTTTAGAGGAAGTCCAAAATCTCGGAGAAAGTGGAAT CATGTTATTGATGAGATGAGAAGAGATATTGATGCAGAGGTATTGAGTAATGGAATCAAGCAACATGAATCTCGCCGCTTGCCTACGAAAGAAGTTAAGG TTCTGGATGCACCAAAAATAAAAGATGACTACTATGTGAACCTCATGGATTGGGGAAAGAACAATGTTCTCGCTGTCGCATTGGGCTCGGCACTATACTT ATGGAACGCAGAGAACCAAGAGGTAAAGAAGCTTTTGGAAGTTCAAGGTGACAATGACTACCCAACAAGTGTAGCCTGGTCAGAGAAAGCCACAAGTTTG GCAATTGGATGCATGAAATCCAAACTTCAAATCTGGGATCCCGAGACTTCCAAATGTATTAGAAGCTTGGGAGGTCATCAGAGCAGGATAGCAGCCATTG CCTGGAATGGTCATACTCTAACAACAGGAAGCCGCGACAGATCCATTATTAATCATGATGTAAGAGTGAGAAACAGTCCAACTTCACGCATGCAAGCACA CACCGAAGAAGTATGTGGTTTGAAATGGTCCAGTGAAGGTAACGTACTGGCAAGTGGAGGAAATGAAAGCTTTATATACATATGGGAAGCTTCGAAAATG AGCTCTTCGAACTTCTTGCATCGATTCAATGCCCATAATCAAGCTGCAGTCAAAGCACTTGCTTGGTGTCCCTATCAATTCAATGTACTGGCCTCGGGAG GAGGTACAGGAGATGGATGTATTAAGATATGGAATATAACAGGAGGGACTTGTACTCATAGCATTGAAACCAAAGCACAGATATGTGGACTGGAATGGAA CAGACATCACAAGGAGATACTAAGTGGCCACGGCTATGGCAATTCCGGAGTTCAAAACCATCTATGCTTGTGGAAGTACCCTTCCATGACTAAAGTGGGA GAAATAAATCGTCATGGACGCAGGGTCATCAACCTTTCTCAGAGTCCTGATGGATTAACTGTGGTATCAGCTGGAGGGGATGAGACTCTTCGCTTCTGGG AGATTTTTGGACCACCTCGTGTTGAAAACTCTGCCTCAGATTTTGAAAACCTTTTGTCTTTCAAAACATCCCTCATAAGATGA
AA sequence Show only first row Show all	>Potri.015G110300.1 pacid=42775578 polypeptide=Potri.015G110300.1.p locus=Potri.015G110300 ID=Potri.015G110300.1.v4.1 annot-version=v4.1 MDQSKKRVVQLQPDWFSPRRLHDSPTQYEFPGDRFIPNRSLMNLDQAHCLLTNKIKEVHNPNFGKGYREMLRESLTLDSEGRPFRMLVFRGSPKSRRKWN HVIDEMRRDIDAEVLSNGIKQHESRRLPTKEVKVLDAPKIKDDYYVNLMDWGKNNVLAVALGSALYLWNAENQEVKKLLEVQGDNDYPTSVAWSEKATSL AIGCMKSKLQIWDPETSKCIRSLGGHQSRIAAIAWNGHTLTTGSRDRSIINHDVRVRNSPTSRMQAHTEEVCGLKWSSEGNVLASGGNESFIYIWEASKM SSSNFLHRFNAHNQAAVKALAWCPYQFNVLASGGGTGDGCIKIWNITGGTCTHSIETKAQICGLEWNRHHKEILSGHGYGNSGVQNHLCLWKYPSMTKVG EINRHGRRVINLSQSPDGLTVVSAGGDETLRFWEIFGPPRVENSASDFENLLSFKTSLIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.015G110300 [exp]	0	1
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	13.92	0.5760
AT2G24170			Endomembrane protein 70 protei...		Potri.006G184200 [exp]	23.45	0.4804
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G118700 [exp]	50.05	0.5112
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	60.54	0.5121
					Potri.006G077750 [exp]	78.89	0.4940
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	88.18	0.4905	CDC48.3
AT3G58530			RNI-like superfamily protein (...		Potri.006G195800 [exp]	124.11	0.4561
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.001G073900 [exp]	127.82	0.4545
					Potri.012G134250 [exp]	134.49	0.4346
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.008G059301 [exp]	138.74	0.4365

Compare expression of checked genes

Potri.015G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.