Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07440 773 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT3G03910 709 / 0 GDH3 glutamate dehydrogenase 3 (.1) AT5G18170 708 / 0 GDH1 glutamate dehydrogenase 1 (.1) AT1G51720 136 / 6e-35 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G113500 [exp] 824 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.013G058300 [exp] 720 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.019G034800 [exp] 716 / 0 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1) Potri.001G199600 [exp] 144 / 2e-37 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1) Potri.001G193600 [exp] 47 / 5e-06 AT1G51720 303 / 7e-100 Amino acid dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032509 [exp] 776 / 0 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10005697 [exp] 722 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10020288 [exp] 722 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10003858 [exp] 712 / 0 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10043007 [exp] 653 / 0 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10006872 [exp] 139 / 8e-36 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10037612 [exp] 112 / 1e-26 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00208 [poplar] [flax] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CL0603 [poplar] [flax] AA_dh_N PF02812 [poplar] [flax] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.015G111000.1 pacid=42776609 polypeptide=Potri.015G111000.1.p locus=Potri.015G111000 ID=Potri.015G111000.1.v4.1 annot-version=v4.1 ATGAATGCTCTTGCAGCTACAAACCGTAATTTCAGACATGCTGCACGCATTCTTGGTTTGGATTCGAAGGTTGAGAAGAGTCTTTTGATCCCTTTCAGAG AGATCAAGGTGGAGTGCACAATTCCCAAGGACGATGGAACTTTGGCGTCTTATATTGGGTTTAGAGTGCAACATGATAATGCTCGTGGGCCCATGAAGGG AGGAATTAGATATCATCCCGAGGTTGACCCCGATGAAGTAAATGCCCTTGCTCAACTAATGACATGGAAGAGTGCTGTAGCAGACATTCCATATGGTGGA GCAAAAGGAGGGATTGGATGCAACCCAGGGGATTTGAGTAAAAGTGAGTTAGAACGTCTGACTCGTGTCTTCACTCAGAAGATCCATGATCTTATTGGCG TCCATACGGATGTTCCAGCACCAGACATGGGCACAAATGCCCAGACCATGGCATGGATATTGGATGAGTACTCGAAATTCCATGGTCACTCGCCTGCTGT TGTGACAGGGAAGCCCATAGATCTTGGTGGATCACTGGGCAGGGAGGCTGCAACTGGCCGTGGAGTTGTTTTTGCTACTGAAGCTTTACTTGCTGAACAT GGGAAGTCCATCAAAGGTTTGACATTTGCAGTTCAGGGTTTTGGAAATGTGGGGTCCTGGGCAGCTAAGATCATACATGAGAGAGGTGGGAAAGTTATCG CTGTGAGTGACATCAGTGGTGCAGTTAAGAATCCAAATGGAATTGATATTCCAGAACTGATCAGGCATAAAGAATCCACCGGTAGTTTGAAAAATTTCCA GGGTGGAGACTCCATGGATGCTAACGAACTGCTTGTACATGAATGTGATGTCCTTATCCCATGTGCTTTGGGTGGAGTTCTAAACAGGGAAAATGCTGCA GATGTGAAGGCCAAGTTCATAATAGAAGCAGCAAACCATCCTACTGATCCAGAAGCAGATGAGATTTTAGCAAAGAAAGGAGTCGTGGTGCTTCCTGACA TATATGCAAATTCTGGAGGTGTCACTGTCAGCTACTTTGAATGGGTTCAGAATATTCAAGGTTTTATGTGGGATGAAGAGCAAGTGAACAAGACACTTCA GAACTACATGACTCGAGCCTTTCATAACATCAAGGTCATGTGCCAGACACATGATTGTAATCTTCGGATGGGTGCCTTTACCCTGGGTGTAAACCGAGTT GCTAGGGCCACTCTGTTAAGGGGATGGGAAGCATAA
AA sequence Show only first row Show all	>Potri.015G111000.1 pacid=42776609 polypeptide=Potri.015G111000.1.p locus=Potri.015G111000 ID=Potri.015G111000.1.v4.1 annot-version=v4.1 MNALAATNRNFRHAARILGLDSKVEKSLLIPFREIKVECTIPKDDGTLASYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGG AKGGIGCNPGDLSKSELERLTRVFTQKIHDLIGVHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEH GKSIKGLTFAVQGFGNVGSWAAKIIHERGGKVIAVSDISGAVKNPNGIDIPELIRHKESTGSLKNFQGGDSMDANELLVHECDVLIPCALGGVLNRENAA DVKAKFIIEAANHPTDPEADEILAKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEEQVNKTLQNYMTRAFHNIKVMCQTHDCNLRMGAFTLGVNRV ARATLLRGWEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Potri.015G111000 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.004G179100 [exp]	6.63	0.8909
					Potri.004G202433 [exp]	7.54	0.8801
AT3G55646			unknown protein		Potri.008G061700 [exp]	9.79	0.9245
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.001G376200 [exp]	10.24	0.9042
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.004G179514 [exp]	10.39	0.9249
AT4G35160			O-methyltransferase family pro...		Potri.019G093200 [exp]	10.95	0.9088
AT3G05858			unknown protein		Potri.013G002000 [exp]	13.56	0.8741
					Potri.019G017150 [exp]	16.00	0.8454
AT2G39130			Transmembrane amino acid trans...		Potri.008G036300 [exp]	17.88	0.8846
AT3G05858			unknown protein		Potri.013G001900 [exp]	19.18	0.9012

Compare expression of checked genes

Potri.015G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.