Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51150 767 / 0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G34630 108 / 3e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G113700 [exp] 885 / 0 AT5G51150 744 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.002G096500 [exp] 118 / 3e-28 AT1G34630 667 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043005 [exp] 796 / 0 AT5G51150 780 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032508 [exp] 769 / 0 AT5G51150 775 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10034188 [exp] 113 / 1e-26 AT1G34630 681 / 0.0 unknown protein Lus10043395 [exp] 66 / 3e-11 AT1G34630 374 / 2e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.015G111200.1 pacid=42776589 polypeptide=Potri.015G111200.1.p locus=Potri.015G111200 ID=Potri.015G111200.1.v4.1 annot-version=v4.1 ATGCCGTCCCTCTCCAAATCGGCATCCTCTCCGCAACCACTCCTCCATCACGACAATTCCGACGCCGAGCGACGCCTTCGCGAGGCAGAGGAACGCCTCC GCGAGGCAATAGAGGATCTCCACCGTAGAAACGCAGTCCATGGTCCTTACCCTCCTTGCGATCACGGACCTGATGAATCCTGTGCCGCTCATGCAATTGG TAATCTCTGTCAAAGCTTCCTTCTCTCTTATGGTGTTCGCGTCGGTATCGGCATTTTGCTTCGTGCTTTCAAGCTTGCTAAAGGACATTCTTACTCTTCT ATTCTCGACCTCAAGCAACTTGTCTCGGAGAAGGATTTAATAGTGAGAGAGGAGGCTTGTCGTGTTGGGTTACTTTTTGGTGGATTTACTGGATCGTATC ATGCACTGAGATGCTTTTTGAGGAAGTTTAGAAGGAAAGAAACGCCAATTAATGCATTTTTAGCAGGTTCGGTTGCAGGGTTGTCTGTTTTAGCATTAGA TGATTCAAACCGGAGACGTACTCTTGCTCTATACCTCTTGGCTAGGGTAGCTCAGTCTGCTTATAATTCTGCAAAATCTAAAAACAAGTTTCATCTTTGG GGAAGTCATTGGAGACATGGAGATGCTTTGCTCTTTGCAATTGCTTGTGCCCAGGTTATGTATGCCTTTATAATGCGTCCTGAGAGCTTGCCAAAAGCAT ATCAAGACTTCATTCAGAAGACTGGACCAGTTGCAGCGCCTGTATACAAGGCTGTAAAAGAAACTTGTAGAGGTGGCCCACTGGATGTTGCCTCATTGTC AGCTTTTTTATCTCGCAGAGGGAAACTGGGCTCTGTGAAGTTGGAAGAATTCCCTTCAATTATTCCTTGTTCTGTTGTTCATCCGGGCACAAATTCATGC TTAGCTCAGAATGCTAATGCAGCATCAGCAACGTTCAGGAAAACATTTCCACTTTACTTCTCACTGACTTTTGTACCTTATGTTGTTCTGCACCTGCAGA AGTTCATGGATGCTCCTGCTCGGACATGTTGGCTAGCTCTTAGAGATGCTGTTCGCTCAACGACATTCTTATCTGCATTTGTTGGAATTTTTCAGGGGGT GATATGCCTTCATCGAAAAATATCGACAAGAGACCACAAACTTGTATATTGGATCGCAGGTGGAATATCTGCCCTTTCTGTACTACTGGAGAAAAAATCT AGACGTGCTGAACTTGCCTTGTATGTTCTTCCAAGGGCTGGAGATTCACTGTGGTATATTTTAGTGAACCACCACGTGCTTCCAAATATTAAGAATGCTG AGGTGGCCCTATTTTGTGCATGCATGGGAGGAGTTATGTACTACTTGGAACATGAACCAGACACCATGGCTCCATTCTTGAGAGGCCTGATCCGACGCTT CCTTGCTAGTAGAATAAGCAATCCGGGTGGTCCATTGAATCGGAGTGCTTCTTACACGTATTTACAGACTCTTGATGCCATCAAGAAGCCAAAATTACAG GAAAGTAGAGAGGCTGAAGCTTCAACTTCTCAGGAATACAATCTTGAATCCATTGAAGGGCTCTAA
AA sequence Show only first row Show all	>Potri.015G111200.1 pacid=42776589 polypeptide=Potri.015G111200.1.p locus=Potri.015G111200 ID=Potri.015G111200.1.v4.1 annot-version=v4.1 MPSLSKSASSPQPLLHHDNSDAERRLREAEERLREAIEDLHRRNAVHGPYPPCDHGPDESCAAHAIGNLCQSFLLSYGVRVGIGILLRAFKLAKGHSYSS ILDLKQLVSEKDLIVREEACRVGLLFGGFTGSYHALRCFLRKFRRKETPINAFLAGSVAGLSVLALDDSNRRRTLALYLLARVAQSAYNSAKSKNKFHLW GSHWRHGDALLFAIACAQVMYAFIMRPESLPKAYQDFIQKTGPVAAPVYKAVKETCRGGPLDVASLSAFLSRRGKLGSVKLEEFPSIIPCSVVHPGTNSC LAQNANAASATFRKTFPLYFSLTFVPYVVLHLQKFMDAPARTCWLALRDAVRSTTFLSAFVGIFQGVICLHRKISTRDHKLVYWIAGGISALSVLLEKKS RRAELALYVLPRAGDSLWYILVNHHVLPNIKNAEVALFCACMGGVMYYLEHEPDTMAPFLRGLIRRFLASRISNPGGPLNRSASYTYLQTLDAIKKPKLQ ESREAEASTSQEYNLESIEGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51150			Mitochondrial import inner mem...		Potri.015G111200 [exp]	0	1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	3.16	0.8874
AT3G12010			unknown protein		Potri.016G060500 [exp]	8.30	0.8136
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.002G168100 [exp]	10.09	0.8788
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.001G361300 [exp]	11.22	0.8615
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	12.72	0.8824	Pt-KDSA.2
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Potri.009G124600 [exp]	13.26	0.8716
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	14.28	0.8228
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Potri.015G057700 [exp]	16.43	0.8705	Pt-ATPC.2
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	18.02	0.8376
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	21.16	0.8613	CAS.3

Compare expression of checked genes

Potri.015G111200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.