Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 337 / 5e-112 Ankyrin repeat family protein (.1) AT4G10720 187 / 4e-54 Ankyrin repeat family protein (.1.2) AT1G14480 181 / 7e-52 Ankyrin repeat family protein (.1.2) AT1G14500 179 / 2e-51 Ankyrin repeat family protein (.1) AT5G15500 176 / 5e-50 Ankyrin repeat family protein (.1.2) AT5G54620 164 / 6e-46 Ankyrin repeat family protein (.1) AT5G54610 156 / 6e-43 ANK ankyrin (.1) AT3G12360 109 / 2e-25 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT4G11000 107 / 2e-25 Ankyrin repeat family protein (.1) AT3G09550 105 / 3e-24 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G113800 [exp] 699 / 0 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 280 / 1e-89 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 215 / 1e-64 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 194 / 1e-56 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.013G017254 [exp] 187 / 3e-54 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 178 / 1e-49 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 119 / 2e-31 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.008G048400 [exp] 107 / 6e-25 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.014G050800 [exp] 100 / 3e-24 AT5G51160 87 / 5e-20 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041537 [exp] 425 / 1e-146 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10034256 [exp] 178 / 3e-50 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10037894 [exp] 169 / 4e-46 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10029007 [exp] 146 / 1e-38 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10038609 [exp] 136 / 2e-36 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10034255 [exp] 139 / 4e-36 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10029008 [exp] 136 / 4e-35 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10029089 [exp] 106 / 1e-25 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10024844 [exp] 107 / 8e-25 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10003308 [exp] 107 / 8e-25 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.015G111300.1 pacid=42775162 polypeptide=Potri.015G111300.1.p locus=Potri.015G111300 ID=Potri.015G111300.1.v4.1 annot-version=v4.1 ATGGATACAAGGCTGTTTGAGGCAGCTCAAAGAGGAAACATCGATTATTTGCAGCGGTTGCTGACAGAAAATCCATTAATCCTCAACATCACACTGCTGT CTGCTGAGAATCCCTTGAATATTGCTGCTGATATGGGGCATGTCGACTTTGTGAAGGAGATTATAAAGTTGAAACCAGTTTTTGCCAAAGAGGTAAACCA AGAAGGCTTTAGCCCTACGCATATAGCAGCAGCCAATGGCCATGTTGAGATTGTGAAGGAGCTAATGAAAGTCGACATCAAACTCTGCCGGTTAGAGGGA AGACAGAAAATGACTCCTCTACACTATGCAGCTATCAAAGGGAGGGCGGAGGTGATCAGTGCAATGCTTTCAGATTGTCCTGATTGTATTGAAGATGAGA CTGATCGAAAGGAGAATGCTTTGCATCTTGCGGTCAAGAATAACAGATTTGAAGCAATAAAGATATTGGGGGACTGGATCAAAGACATGAACAAGGAATA CTTGTTGAACATGAAAGATGAGCAAGGGAATACAGTTTTGCACCTTGCAAGCTGGAAAAAACAACGCGAGGTGTTAGAAATGCTACTTGGAAGTGGAACT GTAAGTTCAGGCTCGTTGGAAGTGAATGCCATTAACCATAGTGGCCTCACCGCCCTCGACATGGTTCTAATTTTCCCAAGCGAAGCAGGGGATAGAGAAA TTGTTGAGATCCTTCGAAGCGCTGGAGCAACAAGAGCAAGAGATATCATCCAGTCTACCATTTCCGACAATCAAACCTCTACTGACAACACCTCAACACC AGAGAGATGCCTGTCAAACGGAAATAATTTGATAGAATACTTCAAGTTTAAAAAGGGGAGGGATTCACCTAGCGAAGCGCGCAGCACACTACTAGTTATA GCTGTTTTGGTTGCAACTGCAACATTCCAAGTTGGAGTCAACCCTCCAGGAGGAGTTTGGCAAGATACAAACATTCCTGACCATACTAATAGTACCAGCA GCAGCAATGCTCACTTTGGAGGTCAGTCCATTATGGCTACCACAAACAAGGTTGGCTTCATGCTGTTTGTGTTTTTCAACTCAGTAGGGTTTTCCATGTC TCTTTACATGATCTATGTCCTCACAAGTGAATTTCCCTTGCAATTTGAGCTTCAAATATGTCTGCTTGCTATGTATGGTACTTATGGAACCGCGTTACCA TGCATTGCGCCATCCAGCCTCAATCTACCTGTCCTGTTAACCACAACAATATTGTCTTCAACTACGTCCGCTTTAGCACAAGTAGCACGTCCACTTACAA CAATGCTCAAGAAATTTTTCAAGGACTTCACTCATAGAGTCGTTTGA
AA sequence Show only first row Show all	>Potri.015G111300.1 pacid=42775162 polypeptide=Potri.015G111300.1.p locus=Potri.015G111300 ID=Potri.015G111300.1.v4.1 annot-version=v4.1 MDTRLFEAAQRGNIDYLQRLLTENPLILNITLLSAENPLNIAADMGHVDFVKEIIKLKPVFAKEVNQEGFSPTHIAAANGHVEIVKELMKVDIKLCRLEG RQKMTPLHYAAIKGRAEVISAMLSDCPDCIEDETDRKENALHLAVKNNRFEAIKILGDWIKDMNKEYLLNMKDEQGNTVLHLASWKKQREVLEMLLGSGT VSSGSLEVNAINHSGLTALDMVLIFPSEAGDREIVEILRSAGATRARDIIQSTISDNQTSTDNTSTPERCLSNGNNLIEYFKFKKGRDSPSEARSTLLVI AVLVATATFQVGVNPPGGVWQDTNIPDHTNSTSSSNAHFGGQSIMATTNKVGFMLFVFFNSVGFSMSLYMIYVLTSEFPLQFELQICLLAMYGTYGTALP CIAPSSLNLPVLLTTTILSSTTSALAQVARPLTTMLKKFFKDFTHRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51160			Ankyrin repeat family protein ...		Potri.015G111300 [exp]	0	1
AT4G32640			Sec23/Sec24 protein transport ...		Potri.002G082900 [exp]	1.00	0.9096
					Potri.010G080501 [exp]	13.74	0.7984
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.008G166500 [exp]	16.37	0.7698
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G134900 [exp]	18.70	0.8378
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.009G007100 [exp]	19.74	0.8559
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025900 [exp]	20.29	0.8559
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	25.59	0.8503
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	26.00	0.8385
AT2G22790			unknown protein		Potri.007G008900 [exp]	28.98	0.8511
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026700 [exp]	34.98	0.8482

Compare expression of checked genes

Potri.015G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.