Plant FIBer expression Database

Potri.015G111628 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51170 325 / 4e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031950
[exp]
363 / 4e-127 AT5G51170 340 / 8e-118 unknown protein
Lus10035151
[exp]
330 / 3e-110 AT5G51170 306 / 7e-101 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0247 2H PF09749 HVSL Uncharacterised conserved protein
Representative CDS sequence
>Potri.015G111628.1 pacid=42774941 polypeptide=Potri.015G111628.1.p locus=Potri.015G111628 ID=Potri.015G111628.1.v4.1 annot-version=v4.1
ATGGAAATACTGAGAGCTTCATACGGCGACGCATCATCTGATTCAGACTCTGATTCCTCTTCTCCACCAACAACGAAATCAGTCCCTCCTGTTTCAAACC
CAAAAGCAGAGGCCATAGCTTTACCACCTCCTCCTCTCGCACTTCTCACTCCTCCTAATCCTCTCGGTGCATTGGATTCCATGCTAAATGGTCAGTCCAG
TCGAATTAGAAGCTTCCCTCATGTTCAAGGCAACTATGCTTTGCACGTCTACATTCCAGTTAATATACCACCTGCGTTGAAGAAGGAAGTGGTTCAGTTC
TTGAACAGGATATCATTAGTTGTGCCTGGTCTTCATGTTGTTGATGCCGATGTTCCTCTTGATATTTTATGTAAAGATGATCACAAGCTTGAACAAGTTG
CATTAGGTAGAGATTTCCATATTAGCTTAGGAAGAACTGTGCCGATTCGAGTTCACCAGATTGATTCAGTCGTTGCTATGCTTCGGCAGAAGCTTCAGTT
TCAAAAAGGATATTGGATTGACTTTAATAAGTGGGAAGTTTTTGTTAATGATGACAAGACACGCACCTTTCTTTCACTAGAAGTTGTGACTGGAGGATTA
GCTGAGATTACCAAGCAAATTCAGTCTGTTAATGATGTGTATAAGCTCCACAATCTTCCTGAATTTTATAAGGATCCACGCCCTCATATATCGTTGGCTT
GGGCATTGGGGGATGTCAGCGATGTCTTAAAGAGAGAAGTTGTAAACGAAATGAAGAGGTCAAGTGCTGGGGGATCAATATTGAAACGTGTATTTAGTTG
TAAATTCAGCGGGATTGAGTGCCATATTGGTAAGAAAACGTACAAAATTTCAAAATTTCTTGATGAAAAATAA
AA sequence
>Potri.015G111628.1 pacid=42774941 polypeptide=Potri.015G111628.1.p locus=Potri.015G111628 ID=Potri.015G111628.1.v4.1 annot-version=v4.1
MEILRASYGDASSDSDSDSSSPPTTKSVPPVSNPKAEAIALPPPPLALLTPPNPLGALDSMLNGQSSRIRSFPHVQGNYALHVYIPVNIPPALKKEVVQF
LNRISLVVPGLHVVDADVPLDILCKDDHKLEQVALGRDFHISLGRTVPIRVHQIDSVVAMLRQKLQFQKGYWIDFNKWEVFVNDDKTRTFLSLEVVTGGL
AEITKQIQSVNDVYKLHNLPEFYKDPRPHISLAWALGDVSDVLKREVVNEMKRSSAGGSILKRVFSCKFSGIECHIGKKTYKISKFLDEK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51170 unknown protein Potri.015G111628
[exp]
0 1
AT4G31830 unknown protein Potri.018G106300
[exp]
3.46 0.9202
Potri.012G066225
[exp]
5.00 0.9073
AT5G05800 unknown protein Potri.001G243108
[exp]
7.74 0.9135
AT2G25770 Polyketide cyclase/dehydrase a... Potri.018G046100
[exp]
9.16 0.9022
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.014G012700
[exp]
14.49 0.8922
AT4G25170 Uncharacterised conserved prot... Potri.001G126300
[exp]
17.66 0.8791
AT5G53540 P-loop containing nucleoside t... Potri.012G027901
[exp]
18.76 0.8822
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.009G157000
[exp]
18.97 0.8824
AT5G01310 bHLH APTX, bHLH140 APRATAXIN-like (.1) Potri.016G120200
[exp]
22.75 0.8786
AT1G51730 Ubiquitin-conjugating enzyme f... Potri.001G193700
[exp]
24.28 0.7722

Potri.015G111628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.