Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 167 / 3e-45 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G47160 150 / 6e-41 YDG/SRA domain-containing protein (.1) AT2G22740 149 / 4e-39 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G47150 128 / 1e-33 YDG/SRA domain-containing protein (.1) AT5G13960 127 / 7e-32 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G73100 111 / 3e-26 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G33290 110 / 5e-26 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT4G13460 110 / 6e-26 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT5G04940 106 / 9e-25 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G24740 102 / 3e-23 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115500 [exp] 450 / 7e-156 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G083100 [exp] 168 / 2e-45 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 114 / 2e-27 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 114 / 3e-27 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.008G173100 [exp] 113 / 5e-27 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 112 / 8e-27 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G188700 [exp] 110 / 7e-26 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 108 / 3e-25 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 104 / 5e-24 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032528 [exp] 170 / 2e-48 AT2G35160 218 / 2e-63 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10043211 [exp] 163 / 1e-45 AT2G35160 192 / 3e-54 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 149 / 9e-39 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 144 / 3e-37 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10003017 [exp] 140 / 2e-36 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011049 [exp] 134 / 5e-34 AT2G22740 255 / 4e-75 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) Lus10026137 [exp] 119 / 1e-28 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10040150 [exp] 118 / 2e-28 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10041515 [exp] 116 / 7e-28 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10008681 [exp] 115 / 1e-27 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Potri.015G111884.1 pacid=42775603 polypeptide=Potri.015G111884.1.p locus=Potri.015G111884 ID=Potri.015G111884.1.v4.1 annot-version=v4.1 ATGGATGGGATCAGTACTTCTGCTCGATGTTCATCAAAGCTTAAGCGAAGGAGAGTAGATGCGATTCGTGAATTTCCCAAAGTGTGCGGAATATTTCCAG TTGTGATGGACTCAAGAGATGGTGAAGATTATATTGTTGATCACGTACAGCCTCCACAAAATCCTGTTACTCAAGCTGCAAGAAGAAAGTACCCTCCTCC GAGGATATTGAAAGGATCTTCTGTCCAGCGAGATTTTCCTAGTGGTTTTGGGCAGGTTCGTTCTGCTGTGAAACAGAATCTGTTTTCTGTTTCTCATGAC ATTTCATCCCACGGTTGCGGTAAGCAAAACAGTTTTGTTTCCCAAGAAAATGCCTCAGAAAATAGTTATGCAGGAAATCAGAATTTTTCTTCTGTTTCCA AGAAAATCTTTGCACAAAACAAGAAGAAGTTTATTGTAGCAGATTATAGGTCGATGAGGTCTGATGGTACTTTGGGGAACAAGGAAACTGGTGGACATCG TGGATCAAGTGCTAGTTGTGATAAAGTGAAAGAAGTCTTGAGATTGTTTCATCTAACACTTGCGAAGCTTTCGAAAGAAAATTTAGCAAAGCCAAAAATG GAGAGAGAATTTAATGTCCCTAGAAAGGCAGCAATACTTATTAAAGATCACCAAAAATGGATTGATACAAGCAAACGGGTGGGTCCGGTTCTTGGAGTTA ACATTGGTGACAAGTTTCGATTTCAGGCTGAACTAAATGTAATCGGCCTTCATTGTCACTTTTATAATGGAATATATTATATGAAAAAGAATGGGATCTC ATTGGCCACTAGCATTGTCGTGTCTGAGCGTTATCCCAATAACATGGAATCGTATGATGTCCTCATTTATTCCGGTCATGGTGGAAATCCAACAGTTCGA GGCAGGCAAGCAGTTAAAGATCAGAAGCTTCAACTGGGAAATCTTGCATTGAAGCACAGTATGGATTGTAAGACTCCTGTACGAGTCATTTACAAAGTAA AGCTTAAGAGTTCCAAAACATTTTCCTTAAAAGGTACTGGCTGGAGCAAAAATTTGAACCCGATATTCGTTTATGATGGCCTATACATAGTTGAAAAATT TTGGGAAGAAAGAGGAGAATTCGGTAAACTTGTCTTCAAATTCAAGTTGAAGAGAAACTTGGATCAACCTAAGTTGCCTCAAAGATTGGAGAAAAAACTC CTTTTATCGAGGTGA
AA sequence Show only first row Show all	>Potri.015G111884.1 pacid=42775603 polypeptide=Potri.015G111884.1.p locus=Potri.015G111884 ID=Potri.015G111884.1.v4.1 annot-version=v4.1 MDGISTSARCSSKLKRRRVDAIREFPKVCGIFPVVMDSRDGEDYIVDHVQPPQNPVTQAARRKYPPPRILKGSSVQRDFPSGFGQVRSAVKQNLFSVSHD ISSHGCGKQNSFVSQENASENSYAGNQNFSSVSKKIFAQNKKKFIVADYRSMRSDGTLGNKETGGHRGSSASCDKVKEVLRLFHLTLAKLSKENLAKPKM EREFNVPRKAAILIKDHQKWIDTSKRVGPVLGVNIGDKFRFQAELNVIGLHCHFYNGIYYMKKNGISLATSIVVSERYPNNMESYDVLIYSGHGGNPTVR GRQAVKDQKLQLGNLALKHSMDCKTPVRVIYKVKLKSSKTFSLKGTGWSKNLNPIFVYDGLYIVEKFWEERGEFGKLVFKFKLKRNLDQPKLPQRLEKKL LLSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.015G111884 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.008G191200 [exp]	3.46	0.8479
AT1G10417			unknown protein		Potri.008G190600 [exp]	5.38	0.8806
AT1G73240			unknown protein		Potri.003G213050 [exp]	5.47	0.8740
AT2G21720			Plant protein of unknown funct...		Potri.013G062700 [exp]	10.04	0.7586
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.009G133900 [exp]	19.28	0.8242
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	25.92	0.8337
AT5G25800			Polynucleotidyl transferase, r...		Potri.002G073300 [exp]	33.98	0.8152
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	34.78	0.8316
					Potri.011G039812 [exp]	36.27	0.7815
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	38.23	0.8121

Compare expression of checked genes

Potri.015G111884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.