Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45170 385 / 4e-133 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 82 / 2e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 45 / 5e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088500 [exp] 80 / 1e-16 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040631 [exp] 426 / 7e-149 AT5G45170 427 / 3e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018280 [exp] 398 / 3e-132 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10000232 [exp] 109 / 6e-29 AT5G45170 82 / 2e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 89 / 9e-20 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10013663 [exp] 89 / 1e-19 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016820 [exp] 42 / 5e-05 AT3G48420 105 / 4e-29 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G112500.1 pacid=42775594 polypeptide=Potri.015G112500.1.p locus=Potri.015G112500 ID=Potri.015G112500.1.v4.1 annot-version=v4.1 ATGGAAGCAGCAGCTTCATCATGTTCAATTCTTCATCCCCTTCGTTCATCAAGCAACTATCATAGCAAACACTACACTGAAACCCCACCTAGAAACAGCA GCAGCAGCAGCTGCTGCAATAATCTCTATCTGGGTCTTCCATTTTCTTCCACTTTCCTAAGAAACTACACTTTCCCAGGAAAATTTGTGCAACAAAATCT GTTCACTACATTTTGCTTAACACCTAGCTCTAGTAAACAAAACCCATCTACAGAATTTGCTGTTCTTCTTGAAGTTGACGGGGTACTTATAGATGCATAC AGGTTAGGAAATCGCCGGGCTTTTAATGTAGCATTTCAAAAGCTTGGACTTGACTGTGCTAATTGGACTCAGCCTATCTATCAAGACCTTGTAAGAAAGA GCGATGGTGATGAGGAGAGGATGCTGGTTTTGTTTTTTAACCGGATTGGCTGGCCTACTTCATTGCCCACAAGTGAGAAAGGCGCGTTCATAAAAAGTGT ACTGCGAGAAAAGAAAAATGCATTGGATGAATTTGTGGCATCTAAAAGTTCACTTTTACGTCCTGGAGTTGAAGATTTTATTGATGATGCATCTAATAAA GGAATACCTGTTGTCATCCTAACAGCTTATGGTAAAAGTGTGGAAAAGATTGCCAGATCCATCATAGACAAGCTTGGGCATGAAAGAATCTCAAAGTTAA AGATTGTCGGGAATGAGGAAGTTGAAAAGAGCTTATATGGTCAACTTGTGCATCATAAAGGAATCTTGTCTGGTACGAATGAGGAACTAGCTAAGGAAGC AATGAAAGCAGTTTCTGCCCAGAAACAAAAGATAGCAGAGGAGGTCGCATCAATGCTAAAGTTGAGTGTTTCCCTTGATTCTAGCTCGTCTGAAAGCCTA CAAAAGACTGTAGCTGCATTGCGTGCAGGGGCAGAGTATGCTGGGGTGTCTGTCAACAATTGTGTCCTTATTGCTGGAAGCCAATCTGGAGTGGCTGGAG CTGAGCAAATTGGCATGCCTTGTGTTGTTCTTCGGAGCAGCTCAACATCTAGAACTCAGTTCCCATCTGCAAAAGCTACAGTGGATGGGTTTGGAGGTCC GGACCTGACGATCTCTAAGCTACTAGACAAGCGGTGGTCCTGA
AA sequence Show only first row Show all	>Potri.015G112500.1 pacid=42775594 polypeptide=Potri.015G112500.1.p locus=Potri.015G112500 ID=Potri.015G112500.1.v4.1 annot-version=v4.1 MEAAASSCSILHPLRSSSNYHSKHYTETPPRNSSSSSCCNNLYLGLPFSSTFLRNYTFPGKFVQQNLFTTFCLTPSSSKQNPSTEFAVLLEVDGVLIDAY RLGNRRAFNVAFQKLGLDCANWTQPIYQDLVRKSDGDEERMLVLFFNRIGWPTSLPTSEKGAFIKSVLREKKNALDEFVASKSSLLRPGVEDFIDDASNK GIPVVILTAYGKSVEKIARSIIDKLGHERISKLKIVGNEEVEKSLYGQLVHHKGILSGTNEELAKEAMKAVSAQKQKIAEEVASMLKLSVSLDSSSSESL QKTVAALRAGAEYAGVSVNNCVLIAGSQSGVAGAEQIGMPCVVLRSSSTSRTQFPSAKATVDGFGGPDLTISKLLDKRWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45170			Haloacid dehalogenase-like hyd...		Potri.015G112500 [exp]	0	1
AT3G58140			phenylalanyl-tRNA synthetase c...		Potri.013G105200 [exp]	2.00	0.9795
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	3.46	0.9733
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	3.60	0.9795	SK1
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	4.00	0.9754	APG2.1
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.006G241100 [exp]	4.24	0.9766
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	4.89	0.9700
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	6.08	0.9559
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	7.34	0.9688
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G058400 [exp]	8.66	0.9739	PtrTrxm3
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.012G144300 [exp]	10.48	0.9685	Pt-HCF106.2

Compare expression of checked genes

Potri.015G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.