Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45120 588 / 0 Eukaryotic aspartyl protease family protein (.1) AT4G16563 166 / 2e-45 Eukaryotic aspartyl protease family protein (.1) AT3G52500 157 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT3G25700 152 / 7e-41 Eukaryotic aspartyl protease family protein (.1.2) AT1G09750 141 / 8e-37 Eukaryotic aspartyl protease family protein (.1) AT2G03200 140 / 1e-36 Eukaryotic aspartyl protease family protein (.1) AT3G54400 135 / 5e-35 Eukaryotic aspartyl protease family protein (.1) AT1G01300 124 / 1e-30 Eukaryotic aspartyl protease family protein (.1) AT2G42980 105 / 4e-24 Eukaryotic aspartyl protease family protein (.1) AT5G07030 105 / 4e-24 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118000 [exp] 772 / 0 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 193 / 1e-55 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 191 / 8e-55 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 172 / 2e-48 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G204700 [exp] 167 / 4e-46 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 160 / 5e-44 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 157 / 1e-42 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 156 / 2e-42 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 155 / 7e-42 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018286 [exp] 495 / 2e-172 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040624 [exp] 213 / 2e-66 AT5G45120 222 / 3e-70 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 207 / 1e-60 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 204 / 3e-59 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 203 / 3e-59 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 201 / 1e-58 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 155 / 1e-41 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10029408 [exp] 152 / 2e-40 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 145 / 4e-38 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 135 / 2e-34 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G113100.1 pacid=42775174 polypeptide=Potri.015G113100.1.p locus=Potri.015G113100 ID=Potri.015G113100.1.v4.1 annot-version=v4.1 ATGGCCATAGCACTCAACAAAAATATCACCACATTTCTTTTCTTTCTCCTAGTCAATAGTCTAGTGTCCTATTCAATCCAGTCCCTAGCAAGTCCAAGAA ACCCTAATTCACTCATTCTTGGTCTTACCCTAGCTTCTAGGGCTTCCTTTCCAACTTATCCAAAAGCTTCCACTTCCTCAAGAAAGATTGTCTCAATAGA TGTTTTGGGCGCGAAGAAGCCTTCAAGGGAAGTTAGAGATGGGTATTTGATATCTCTAAATATAGGCACACCCCCACAAGTCATTCAAGTGCTCATGGAT ACTGGTAGTGACCTTACTTGGGTTCCTTGTGGAAACCTTTCTTTTGATTGCATGGAATGTGATGATTATAGAAACAATAAGTTGATGGCTACTTTCTCTC CTTCCTATTCTTCTTCGTCATATAGGGCCTCTTGTGCTAGTCCCTTCTGCATTGATATTCATAGTTCTGATAACCCTTTGGATACATGCACTGTGGCTGG ATGCTCATTGAGCACCCTTGTTAAAGCCACATGTTCGAGGCCATGCCCTTCATTTGCTTACACATACGGTGCAGGAGGAGTGGTCACTGGGATACTGACT AGGGATACACTTAGGGTTAATGGAAGTAGTCCTGGTGTCGCTAAAGAAATTCCAAAATTCTGTTTTGGTTGTGTAGGGTCTGCATATAGGGAGCCTATTG GGATTGCAGGGTTTGGTAGGGGTACACTTTCTATGGTTTCACAACTAGGGTTTCTTCAGAAGGGCTTCTCACATTGCTTCTTGGCCTTCAAATATGCAAA TAACCCTAATATTTCAAGCCCATTAGTTGTAGGAGACATTGCCCTTACTTCTAAAGACGATATGCAATTCACTCCGATGTTGAATAGCCCCATGTACCCT AATTTCTACTACGTTGGTCTAGAGGCCATTACTGTTGGCAATGTTAGTGCAACTGAAGTGCCTTCAAGCTTGAGGGAGTTTGATTCACTGGGTAATGGGG GCATGAAGATTGACTCAGGAACCACTTATACTCACCTACCTGAACCGTTCTATTCTCAGGTTCTCTCTATTCTTCAATCAACAATAAATTATCCTAGAGA CACTGGCATGGAGATGCAAACCGGGTTTGATCTTTGCTATAAGGTCCCACGTCCAAACAATAACACTCTCACGTCGGATGATCTCCTTCCTTCAATCACT TTCCATTTCTTGAACAATGTGAGTTTAGTTTTGCCCCAAGGAAATCACTTCTATCCTGTGAGTGCCCCAGGTAACCCTGCTGTGGTCAAATGCCTCATGT TCCAAAGCACGGATGATGGTGATGATGGACCAGCTGGGGTGTTTGGGAGCTTCCAACAGCAAAACGTGGAGGTTGTCTATGACTTGGAGAAAGAGAGAAT TGGGTTTCAACCAATGGACTGTGCTTCAGCTGCATCTTCTCAAGGACTTCACAAGACCTAA
AA sequence Show only first row Show all	>Potri.015G113100.1 pacid=42775174 polypeptide=Potri.015G113100.1.p locus=Potri.015G113100 ID=Potri.015G113100.1.v4.1 annot-version=v4.1 MAIALNKNITTFLFFLLVNSLVSYSIQSLASPRNPNSLILGLTLASRASFPTYPKASTSSRKIVSIDVLGAKKPSREVRDGYLISLNIGTPPQVIQVLMD TGSDLTWVPCGNLSFDCMECDDYRNNKLMATFSPSYSSSSYRASCASPFCIDIHSSDNPLDTCTVAGCSLSTLVKATCSRPCPSFAYTYGAGGVVTGILT RDTLRVNGSSPGVAKEIPKFCFGCVGSAYREPIGIAGFGRGTLSMVSQLGFLQKGFSHCFLAFKYANNPNISSPLVVGDIALTSKDDMQFTPMLNSPMYP NFYYVGLEAITVGNVSATEVPSSLREFDSLGNGGMKIDSGTTYTHLPEPFYSQVLSILQSTINYPRDTGMEMQTGFDLCYKVPRPNNNTLTSDDLLPSIT FHFLNNVSLVLPQGNHFYPVSAPGNPAVVKCLMFQSTDDGDDGPAGVFGSFQQQNVEVVYDLEKERIGFQPMDCASAASSQGLHKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45120			Eukaryotic aspartyl protease f...		Potri.015G113100 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028100 [exp]	3.46	0.9345
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	6.32	0.9344
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Potri.001G122100 [exp]	7.41	0.9222
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	8.30	0.9311
					Potri.001G019890 [exp]	14.69	0.9248
AT2G45220			Plant invertase/pectin methyle...		Potri.015G127700 [exp]	16.79	0.9220	Pt-PME.5
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037800 [exp]	18.33	0.9127
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G042650 [exp]	21.00	0.9154
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	29.74	0.9057
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G201000 [exp]	33.82	0.8978

Compare expression of checked genes

Potri.015G113100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.