Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45530 93 / 2e-20 Protein of unknown function (DUF594) (.1) AT5G45470 89 / 3e-19 Protein of unknown function (DUF594) (.1) AT5G45480 84 / 1e-17 Protein of unknown function (DUF594) (.1) AT4G19080 83 / 1e-17 Protein of unknown function (DUF594) (.1) AT5G45540 82 / 1e-16 Protein of unknown function (DUF594) (.1) AT4G19090 71 / 2e-13 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G107900 [exp] 605 / 0 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1) Potri.015G116450 [exp] 498 / 3e-176 AT4G19080 102 / 9e-24 Protein of unknown function (DUF594) (.1) Potri.015G107500 [exp] 382 / 2e-127 AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1) Potri.015G059200 [exp] 352 / 4e-116 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1) Potri.015G108000 [exp] 340 / 1e-114 AT5G45470 115 / 3e-27 Protein of unknown function (DUF594) (.1) Potri.015G107800 [exp] 347 / 6e-114 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1) Potri.015G116600 [exp] 347 / 2e-113 AT5G45540 170 / 6e-44 Protein of unknown function (DUF594) (.1) Potri.015G114101 [exp] 337 / 3e-110 AT5G45540 177 / 3e-46 Protein of unknown function (DUF594) (.1) Potri.015G113400 [exp] 335 / 4e-109 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04578 [poplar] [flax] DUF594 Protein of unknown function, DUF594
Representative CDS sequence Show only first row Show all	>Potri.015G113500.1 pacid=42776427 polypeptide=Potri.015G113533.1.p locus=Potri.015G113500 ID=Potri.015G113500.1.v4.1 annot-version=v4.1 ATGATCTGGTTGACTGATGAAGGAGGGAACGCCCTGAGTAGTGCTCTTTATTCTCCGATAAGGAAGTTAACTAGAAGCGAGAGGTGGTCGAGATCCATAG CACAGTATAACCTGATAAGCTCTTCCATTGAAAGCAAGCCACCTAAATGCTTGGAATTTCTGGGAATCGATGAAATGATGAGGCAGATGAATGTGAATCG GAAAGATATGAATGGTGGACTACAAGATTTTATTTTCGGACACCTCCAAAAGAACTCTCTGAAGATTAAGGAAGATTTCAATTTCATTGATAAGAATTTC AGAAGAAAAATAATTGAGATCTGTTACTGTGTTGATAAAGATGCAAACAATGTCCCCTCAGAGTATGAAACAAGCAGATGCCTATCTGAATACATGATGT ATCTTTTGGTGATGAGACCAGATACGCTATCCCAAGGAATCGGTGATGAGGGATATCTACATTCCTTGCGAGACTTGGATAGCATCATAAGTAAGGAGGA AGTTGTAGATGCAATTCTGTTCTACTATGAATCATATGTTATTGATGATATACGGTTTCAATTTCGCTGGAAAGAAACCAAGTTAGCGGTAGCTGGTGGG GATAGGCTCGCCAAGCAATTGCGTTTGCTGGGATTTAAGAAGCGATGGGAGATAATCGAAGAAGTTTGGATGGAAATGCTTGCTTATGCAGCAGCTCATT GTCCATGGAAAGAACACGCTCAACAACTGAGAAGAGGTGGAGAGCTGCTCACCCATGTCTGCTTTCTCATGCTACATCTTGGTTTGAGCGAACAGTATGA ATACAATTCATTAAAAGACTACAATTCATTAAATGATTACATACGTGGTCATGATCTGGTATTGCCATGGGAGGGAGAAGAATATCGTGAGGCCATTGAT AGATATCTGAGAGATAATACAGACATGTCACTGTCAAGTTCCACTGAGGAGGTGAAAGAACTGAAAAGGACGGTAGCATATAAAGACGAAGAGCTTGAGC GTAAAGAGCGAGAGCTTGAGCAGTTAAGGTCCTTTTTAGTTGCATCAACTCCATAG
AA sequence Show only first row Show all	>Potri.015G113500.1 pacid=42776427 polypeptide=Potri.015G113533.1.p locus=Potri.015G113500 ID=Potri.015G113500.1.v4.1 annot-version=v4.1 MIWLTDEGGNALSSALYSPIRKLTRSERWSRSIAQYNLISSSIESKPPKCLEFLGIDEMMRQMNVNRKDMNGGLQDFIFGHLQKNSLKIKEDFNFIDKNF RRKIIEICYCVDKDANNVPSEYETSRCLSEYMMYLLVMRPDTLSQGIGDEGYLHSLRDLDSIISKEEVVDAILFYYESYVIDDIRFQFRWKETKLAVAGG DRLAKQLRLLGFKKRWEIIEEVWMEMLAYAAAHCPWKEHAQQLRRGGELLTHVCFLMLHLGLSEQYEYNSLKDYNSLNDYIRGHDLVLPWEGEEYREAID RYLRDNTDMSLSSSTEEVKELKRTVAYKDEELERKERELEQLRSFLVASTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45530			Protein of unknown function (D...		Potri.015G113500 [exp]	0	1
AT2G32280			Protein of unknown function (D...		Potri.007G119600 [exp]	4.24	0.8291
					Potri.010G076425 [exp]	10.09	0.8457
AT5G45540			Protein of unknown function (D...		Potri.015G116600 [exp]	13.56	0.8283
AT1G68330			unknown protein		Potri.008G122300 [exp]	14.49	0.8286
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	17.32	0.8242
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	18.16	0.8312
AT3G50780			unknown protein		Potri.005G129700 [exp]	19.69	0.8330
AT2G26975			Ctr copper transporter family ...		Potri.009G038700 [exp]	21.93	0.8083	Pt-COPT2.1
AT2G41550			Rho termination factor (.1)		Potri.016G043300 [exp]	23.04	0.8247
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075500 [exp]	32.18	0.7290

Compare expression of checked genes

Potri.015G113500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.