Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G113466 [exp] 64 / 5e-15 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1) Potri.015G116900 [exp] 63 / 2e-14 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 60 / 2e-12 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 57 / 2e-11 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 56 / 5e-11 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018289 [exp] 44 / 1e-06 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 44 / 1e-06 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G114501.1 pacid=42776256 polypeptide=Potri.015G114501.1.p locus=Potri.015G114501 ID=Potri.015G114501.1.v4.1 annot-version=v4.1 ATGAGAAGGAATACAATGGCCGGGAGTGCCTCCATCACTTCCCATACAATGGATGATGATCTTCACGTGAAGCTGCTATACCTGGAGAACAGAGAGAGAA ATCCGGCAATGATAAGTTCAAATACTCTGTTGACATACCTGCATATTAACAGTACTGATCTTCTTGCTGCTCTATCCGAGCTTTAA
AA sequence Show only first row Show all	>Potri.015G114501.1 pacid=42776256 polypeptide=Potri.015G114501.1.p locus=Potri.015G114501 ID=Potri.015G114501.1.v4.1 annot-version=v4.1 MRRNTMAGSASITSHTMDDDLHVKLLYLENRERNPAMISSNTLLTYLHINSTDLLAALSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.015G114501 [exp]	0	1
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.006G163900 [exp]	3.00	0.7974
AT5G47900			Protein of unknown function (D...		Potri.009G136700 [exp]	3.16	0.8048
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Potri.001G299700 [exp]	4.24	0.7843
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	8.94	0.7967
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016100 [exp]	10.58	0.7738
AT4G06599			ubiquitin family protein (.1)		Potri.003G011300 [exp]	13.74	0.7726
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014382 [exp]	14.28	0.7671
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G267100 [exp]	15.19	0.7672
AT5G05330			HMG-box (high mobility group) ...		Potri.019G049100 [exp]	18.00	0.7586
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014386 [exp]	21.02	0.7610

Compare expression of checked genes

Potri.015G114501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.