Plant FIBer expression Database

Potri.015G114900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45540 189 / 1e-50 Protein of unknown function (DUF594) (.1)
AT5G45480 180 / 2e-47 Protein of unknown function (DUF594) (.1)
AT5G45460 162 / 9e-42 unknown protein
AT5G45470 156 / 1e-39 Protein of unknown function (DUF594) (.1)
AT5G45530 152 / 2e-38 Protein of unknown function (DUF594) (.1)
AT4G19090 121 / 2e-28 Protein of unknown function (DUF594) (.1)
AT4G19080 81 / 2e-16 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G116201
[exp]
1105 / 0 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1)
Potri.015G059200
[exp]
947 / 0 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Potri.015G113600
[exp]
814 / 0 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1)
Potri.015G116100
[exp]
808 / 0 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1)
Potri.015G107900
[exp]
794 / 0 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1)
Potri.015G116600
[exp]
787 / 0 AT5G45540 170 / 6e-44 Protein of unknown function (DUF594) (.1)
Potri.015G113400
[exp]
782 / 0 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1)
Potri.015G107800
[exp]
777 / 0 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1)
Potri.015G107500
[exp]
774 / 0 AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.015G114900.2 pacid=42775353 polypeptide=Potri.015G114900.2.p locus=Potri.015G114900 ID=Potri.015G114900.2.v4.1 annot-version=v4.1
ATGCTTAAAAAATTGCCTGAAGAAGTCTTAAATTTATGGGACAATTGGAAGATTCGAGGAATGGTTTTGCTTAGTCTCTTGCTACAAACCATCCTCATCA
TATTTGGTCCTCGGCGAAAGACCAGTGGCAGAATCTGGATCAGGATTCTCGTTTGGTCTGCATACCTATCAGCAGACTCGGTGGCAACTTTTGCACTGGG
TTATCTAGCCAGGAGCCAAGGAGATTCATCAGGTGACAATTCAGAGAAAGCAAACAATTCTATCCAGGCATTTTGGGCACCTTTTCTACTCCTGCACCTT
GGTGGCCCGGACACAATCACTGCATACTCGATTGAAGATAACGAGTTGTGGTTAAGGCATTTACTTGGTCTTGCAGTCCAAGTCGGAGTGGCTTTTTATG
TCTTCTTAAGGTCTTGGGGTAGCGGTATCCTCACATTCTTAGCAATCCCAATGTTCATTGTTGACATTGTAAAGTACGCAGAGAGGACTTGGGTGCTCTG
GTCTTCAAGCTTTGAGGCATTAAGAAAAACACGTGATCAAGCTCTCGAGGGAAATTATCTTCTTCAAGCTTATACTTTTTTGGATATATCCATGTTTATG
ATGCAGGATCTTGTCCCCGGCATTCCTGCACTAATAAAAAGCCAGGTGCTGATTTCCAAAAATTCAGCAGAAGGCGCCTTCAAGGTGGTAGAGATTGAGC
TTGGATTAATATATGATATGCTTTACACTAAAGCGCCACTGATTTACTCTCGTGCCGGAATCAGTCTTCGTTCTATAAGCTTTCTGCTCACTTTTACTGC
GTTTATTACCTTCCAAGTCCTGATTGACAAGCATGCCTCCTCAACTATCGACATTACAATCACGTATTTATTGTTGGCGGCCGCTGTTTTTCTCGAGTTT
TATGCTTTTTTATGCCTTGTTTTCTCTGACTGGACAATGACAGTTTTACCAGAACCCAGTCTAGCATCAAACAATTTTCTAAACCCTTTACAACATAACT
GTGTTGTTTTCTCTACCTGGACAATGATTTGGTTGGAAGATGAAGGATGGAATGCCTTGAATAGTGCTATTTATTCTCTGATAAGGAAGTTAACTAGAAG
CGAGAGGTGGTCGAGATCCATAGCGCAGCATGACCGGATAAGCTCTTCCATTAAAAACATGCCACTTGGATGTTTGAGATCGCTGATAATCAATGAAAAG
ACGATGCAGATGTTTGTGCATCGGGTAGATTTGAATGTTGGTCTACAACGTTTTATTTTCGGACATCTTCGAAAGAAAGCTGAGATGATGAAGGAAGATT
TTTGTTTTATTGATAAAAATCTCAGAAGTAAAGTAATTGGTCAGAGGGGAGATGGTGTGCTAGAAAAAGAGGGACTGTTACAGTCCTACAAGTGGTGCAC
GACTGAAGACACAATTCCTTCACTCTGGCATATCGCAATAGAGATTTGTTATCTTGTTGATAGAAGTAATGTCTCCACAGAATATGAAACAAGCAAATGC
TTATCTGAATACATGATGTATCTTTTGATGATAAGACCAAATATGCTCTCTAAAGGATTCGGTGACGAGGAATATCTAGGAACTTTGCAAGACTTGCAGC
GTCTAAATCCGCACCATACAAGAGGCGCTGAGGCGAAGAAGAATGTTGTTGATGGAATTTTGCGTTTCGAATTATCTCTTGATGATACAACGTTACAAAG
TGTCTGGAAAATATCCAGTTCAGTGGTTATCGGTGGGGGAAAGCTCGCCAAGCAATTGCTGCCATTGGAATCTAAGAAGCGATGGGAGATGATAAATGAA
GTTTGGATAGAAATGGTTGCTTATGCAGCAGCTCATTGTCCATGGAAAGAACATACTCATCAACTAAGAAGAGGTGGAGAGTTACTCACTCATGTCTTCC
TTTTGATGCTACATCTTGGTTTGAGCGAACAGTACGAGTTTAAAGGATTTGACGGTGACGAAGTTAGTGTATGGGAGTTTTTGTCATCGGTAAGTATACC
AAAAATCTCTCTCAAGTAA
AA sequence
>Potri.015G114900.2 pacid=42775353 polypeptide=Potri.015G114900.2.p locus=Potri.015G114900 ID=Potri.015G114900.2.v4.1 annot-version=v4.1
MLKKLPEEVLNLWDNWKIRGMVLLSLLLQTILIIFGPRRKTSGRIWIRILVWSAYLSADSVATFALGYLARSQGDSSGDNSEKANNSIQAFWAPFLLLHL
GGPDTITAYSIEDNELWLRHLLGLAVQVGVAFYVFLRSWGSGILTFLAIPMFIVDIVKYAERTWVLWSSSFEALRKTRDQALEGNYLLQAYTFLDISMFM
MQDLVPGIPALIKSQVLISKNSAEGAFKVVEIELGLIYDMLYTKAPLIYSRAGISLRSISFLLTFTAFITFQVLIDKHASSTIDITITYLLLAAAVFLEF
YAFLCLVFSDWTMTVLPEPSLASNNFLNPLQHNCVVFSTWTMIWLEDEGWNALNSAIYSLIRKLTRSERWSRSIAQHDRISSSIKNMPLGCLRSLIINEK
TMQMFVHRVDLNVGLQRFIFGHLRKKAEMMKEDFCFIDKNLRSKVIGQRGDGVLEKEGLLQSYKWCTTEDTIPSLWHIAIEICYLVDRSNVSTEYETSKC
LSEYMMYLLMIRPNMLSKGFGDEEYLGTLQDLQRLNPHHTRGAEAKKNVVDGILRFELSLDDTTLQSVWKISSSVVIGGGKLAKQLLPLESKKRWEMINE
VWIEMVAYAAAHCPWKEHTHQLRRGGELLTHVFLLMLHLGLSEQYEFKGFDGDEVSVWEFLSSVSIPKISLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45540 Protein of unknown function (D... Potri.015G114900
[exp]
0 1
AT3G29310 calmodulin-binding protein-rel... Potri.017G091100
[exp]
1.73 0.8488
Potri.014G003175
[exp]
5.00 0.7853
AT2G33170 Leucine-rich repeat receptor-l... Potri.003G174900
[exp]
6.70 0.8199
AT3G22520 unknown protein Potri.010G086700
[exp]
7.74 0.8109
AT4G24060 DOF AtDof4,6 Dof-type zinc finger DNA-bindi... Potri.001G086400
[exp]
7.74 0.8102 Pt-DOF4.2
AT3G25430 Polynucleotidyl transferase, r... Potri.014G018500
[exp]
8.36 0.8330
Potri.005G135700
[exp]
10.90 0.8022
Potri.006G120901
[exp]
11.74 0.8308
AT1G11330 S-locus lectin protein kinase ... Potri.011G039000
[exp]
16.73 0.8055
Potri.019G024466
[exp]
17.29 0.7899

Potri.015G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.