Plant FIBer expression Database

Potri.015G116201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45540 202 / 3e-55 Protein of unknown function (DUF594) (.1)
AT5G45470 194 / 7e-52 Protein of unknown function (DUF594) (.1)
AT5G45460 186 / 1e-49 unknown protein
AT5G45480 187 / 2e-49 Protein of unknown function (DUF594) (.1)
AT5G45530 161 / 3e-41 Protein of unknown function (DUF594) (.1)
AT4G19090 129 / 7e-31 Protein of unknown function (DUF594) (.1)
AT4G19080 100 / 9e-23 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G059200
[exp]
1145 / 0 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Potri.015G114900
[exp]
1135 / 0 AT5G45540 189 / 1e-50 Protein of unknown function (DUF594) (.1)
Potri.015G113600
[exp]
899 / 0 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1)
Potri.015G116100
[exp]
894 / 0 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1)
Potri.015G107900
[exp]
885 / 0 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1)
Potri.015G116600
[exp]
880 / 0 AT5G45540 170 / 6e-44 Protein of unknown function (DUF594) (.1)
Potri.015G107800
[exp]
866 / 0 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1)
Potri.015G113400
[exp]
862 / 0 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1)
Potri.015G113700
[exp]
861 / 0 AT5G45480 181 / 2e-47 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.015G116201.1 pacid=42776016 polypeptide=Potri.015G116201.1.p locus=Potri.015G116201 ID=Potri.015G116201.1.v4.1 annot-version=v4.1
ATGCTTAAAAAATTGCCTGAAGAAGTCTTAAATTTATGGGACAATTGGAAGATTCGAGGAATGGTTTTGCTTAGTCTCTTGCTACAAACCATCCTCATCA
TATTTGGTCCTCGGCGAAAGACCAGTGGCAGAATCTGGATCAGGATTCTCGTTTGGTCTGCATACCTATCAGCAGACTCGGTGGCAACTTTTGCACTGGG
TTATCTAGCCAGGAGCCAAGGAGATTCATCAGGTGACAATTCAGAGAAAGCAAACAATTCCATCCAGGCATTTTGGGCACCTTTTCTACTCCTGCACCTT
GGTGGCCCGGACACAATCACTGCATACTCGATTGAAGATAACGAGTTGTGGTTAAGGCATTTACTTGGTCTTGCAGTCCAAGTCGGAGTGGCTTTTTATG
TCTTCTCAAGGTCTTGGGGTAGCGGTATCCTCACATTCTTAGCAATCCCAATGTTCATTGTTGGCATTGTAAAGTACGCAGAGAGGACTTGGGTGCTCTG
GTCTTCAAGCTCTGAGGTCTTGAAAAAGTCTATTCTCTCAAAGTTTCGGCCTCTTTATCCATTAATGGCATTAACAAAAACACGTCATCAAGCTCTCGAG
GGAAATTATCTTCTTCAAGCTTATACTTTTTTGGATATATCCATGTTTATGATTCAGGATCTTGTCCCCGGCATTCCTGCACTAATAAAAAGCCAGGTGC
TGATTTCCAAAAATTCAGCAGAAGGCGCCTTCAAGGTGGTAGAGATTGAGCTTGGATTAATATATGATATGCTTTACACTAAAGCGCCACTGATTTACTC
TCGTGCCGGAATCAGTCTTCGTTCTATAAGCTTTCTGCTCACTTTTACTGCGTTTATTACCTTCCAAGTCCTGATTGACAAGCATGCCTACTCAACTATC
GACATTACAATCACGTATTTATTGTTTGCGGCCGCTGTTTTTCTCGAGTTTTATGCTTTTTTATGCCTTGTTTTCTCTGACTGGACAATGATTTGGTTGG
AAGATGAAGGATGGAATGCCCTGAATAGTGCTATTTATTCTCTGATAAGGAAGTTAACTAGAAGCAAGAGGTGGTCGAGATCCATAGCACAGCATGACCG
GATAAGCTCTTCCATTAAAAACATGCCACTTGGATGTTTGAGATCGCTGATAATCAATGAAAAGACGATGCAGATGTTTGTGCATCGGGTAGATTTTAAT
GTTGGTCTACAACGTTTTATTTTCGGACATCTTCGAAAGAAAGCTGAGATGATGAAGGAAGATTTTTGTTTTATTGATAAAAATCTCAGAAGTAAAGTAA
TTGGTCAGAGGGGAGATGGTGTGCTAGAAAGAGAGGGACTGTTACAGTCCTCCAAGTGGTGCACGACTGAAGTAGAATTCAGTTGGAGCATTCTTCTCTG
GCATATCGCAACAGAGATTTGTTATCTTGGTGATAAAAATAGAAGTAATGTCTCCACAGAATATGAAACAAGCAAATGCTTATCTGAATACATGATGTAT
CTTTTGGTGATAAGACCAAATATGCTCTCTAAAGGATTCGGGGACGAGGAATATCTAGGAACTTTGCAAGACTTGCAGCGTCTAAATCCGCACAAAACAA
GAGGCGATGAGGCGAAGAAGGGTGTTGTTGATGGAATTTTGCGTTCCGAATTATCTCTTGATGATACAACGTTTCAAAGTCTCTGGAAAACATCCAATTC
AGTGGTAAGTGGTGCGGAAAAGCTCGCCAGGCAATTCCAGTCATTGGAACATGAGAAGCGATGGGTGATGATAAAGGAAGTTTGGATAGAAATGCTTGCT
TATGCAGCAGCTCTTTGTCCATGGAAAGAACATACTCATGAACTGAGAAGAGGTGGAGAGTTACTCACTCATGTCTTCCTTCTCATGCAACATCTTGGTT
TGAGCGAACAGTACGAGTTTAAAGGATTTGACGGTGACGAAGTTAGTGTATTGGAGTTTTTTTCATCGGATGAGAGTCGAAAATATCAGTTGGCCGTAGA
AAGGTATGCGAAAGTTACTGTAGACATGCCAATATCAAGACCCGTCAAGGCCTTATACAGATATTTGGCTAAACCTGCAGACACGTCACTGTCAGGTCCT
GATGAGGAGGTGGATGAAGAACATCTCCTGGCGTTAATTCAAGAGATTGGATAA
AA sequence
>Potri.015G116201.1 pacid=42776016 polypeptide=Potri.015G116201.1.p locus=Potri.015G116201 ID=Potri.015G116201.1.v4.1 annot-version=v4.1
MLKKLPEEVLNLWDNWKIRGMVLLSLLLQTILIIFGPRRKTSGRIWIRILVWSAYLSADSVATFALGYLARSQGDSSGDNSEKANNSIQAFWAPFLLLHL
GGPDTITAYSIEDNELWLRHLLGLAVQVGVAFYVFSRSWGSGILTFLAIPMFIVGIVKYAERTWVLWSSSSEVLKKSILSKFRPLYPLMALTKTRHQALE
GNYLLQAYTFLDISMFMIQDLVPGIPALIKSQVLISKNSAEGAFKVVEIELGLIYDMLYTKAPLIYSRAGISLRSISFLLTFTAFITFQVLIDKHAYSTI
DITITYLLFAAAVFLEFYAFLCLVFSDWTMIWLEDEGWNALNSAIYSLIRKLTRSKRWSRSIAQHDRISSSIKNMPLGCLRSLIINEKTMQMFVHRVDFN
VGLQRFIFGHLRKKAEMMKEDFCFIDKNLRSKVIGQRGDGVLEREGLLQSSKWCTTEVEFSWSILLWHIATEICYLGDKNRSNVSTEYETSKCLSEYMMY
LLVIRPNMLSKGFGDEEYLGTLQDLQRLNPHKTRGDEAKKGVVDGILRSELSLDDTTFQSLWKTSNSVVSGAEKLARQFQSLEHEKRWVMIKEVWIEMLA
YAAALCPWKEHTHELRRGGELLTHVFLLMQHLGLSEQYEFKGFDGDEVSVLEFFSSDESRKYQLAVERYAKVTVDMPISRPVKALYRYLAKPADTSLSGP
DEEVDEEHLLALIQEIG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45540 Protein of unknown function (D... Potri.015G116201
[exp]
0 1
AT5G45470 Protein of unknown function (D... Potri.015G108000
[exp]
6.00 0.9222
AT5G45540 Protein of unknown function (D... Potri.015G116100
[exp]
6.48 0.8840
AT5G45540 Protein of unknown function (D... Potri.015G107800
[exp]
6.70 0.8966
AT1G04520 PDLP2 plasmodesmata-located protein ... Potri.010G065800
[exp]
10.86 0.8210
AT5G45540 Protein of unknown function (D... Potri.015G107500
[exp]
12.64 0.8941
AT2G40270 Protein kinase family protein ... Potri.010G185300
[exp]
13.19 0.7662
AT5G41620 unknown protein Potri.001G096200
[exp]
14.56 0.7961
AT1G26100 Cytochrome b561/ferric reducta... Potri.010G131100
[exp]
16.24 0.8452
AT3G50870 GATA GATA18, HAN, MN... MONOPOLE, HANABA TANARU, GATA ... Potri.005G122700
[exp]
19.87 0.8876
AT5G45540 Protein of unknown function (D... Potri.015G116600
[exp]
23.06 0.8363

Potri.015G116201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.