Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61840 619 / 0 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 597 / 0 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G22940 239 / 4e-75 F8H FRA8 homolog (.1) AT2G28110 227 / 2e-70 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G03795 106 / 4e-25 Exostosin family protein (.1) AT5G37000 101 / 2e-23 Exostosin family protein (.1) AT4G16745 97 / 5e-22 Exostosin family protein (.1.2) AT4G32790 96 / 2e-21 Exostosin family protein (.1) AT4G38040 94 / 3e-21 Exostosin family protein (.1) AT5G11130 92 / 2e-20 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109200 [exp] 637 / 0 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 635 / 0 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 603 / 0 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 566 / 0 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.015G107200 [exp] 310 / 3e-106 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.009G006500 [exp] 246 / 4e-78 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.006G118000 [exp] 107 / 1e-25 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G025200 [exp] 106 / 3e-25 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 104 / 9e-25 AT5G20260 545 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032530 [exp] 612 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10043209 [exp] 611 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 583 / 0 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 582 / 0 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 232 / 2e-72 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 184 / 3e-54 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10012723 [exp] 96 / 8e-22 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 95 / 4e-21 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10002664 [exp] 94 / 4e-21 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 95 / 5e-21 AT5G03795 602 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.015G116700.4 pacid=42776605 polypeptide=Potri.015G116700.4.p locus=Potri.015G116700 ID=Potri.015G116700.4.v4.1 annot-version=v4.1 ATGCAAAAGGACCCAAGATGCCTCACCCACATGTTTGCAGCTGAGATCTTTATGCATCGGTTCCTATTATCTAGCCCTGTACGAACGCTCAATCCCAAGG AAGGTGATTGGTTTTATACCCCTGTATATACAACTTGTGATTTGACTCTAAATAGCCTTTATTTGCCTTTCAAATCACCACGAATGATAAGAAGTGCTAC ACAACTTATTTCTTCAAACTGGCCTTATTGGAATCGGACTGAAGGTGCTGACCACTTTTTTGTTGTGCCACACGACTTTGGTGCATGCTTCCACTATCAA GAAGAGAAGGCTATCGAAAGAGGAATTCTTCCCTTGCTCCAACATGCCACCTTGGTGCAAACTTTTGGACAAAGAAATCATGTTTGCTTAAAAGATGGCT CCATTACAGTTCCTTCATATGCCCCCCCACAGAAAATGCAAACCCACCTGATTCCTGAAAAAACACCTCGGTCAATTTTTGTTTACTTCAGAGGATTGTT TTATGATGTAGGAAATGACCCAGAAGGTGGCTACTATGCAAGAGGTGCACGAGCAGCAGTCTGGGAGAACTTCAAGGACAATCCACTTTTTGACATTTCC ACAGAGCACCCAACAACGTATTACGAAGACATGCAACAAGCTGTTTTCTGTTTGTGCCCCCTCAGCTGGGCTCCATGGAGTCCGAGATTGGTTGAAGCAC TGATATTTGGTTATATCCCTGTTATTATAGTTGACGATATTGTTTTACCCTTTGCTGATGCAATCCCATGGGAAGAAATTGGGGTGTTTGTAGACGAGAA AGATGTTCCAAATTTGGACACCATACTCACTTCCATTCCACCTGAAGTGATATTGAGGAAGCAGAGACTGCTTGCAAACCCTTCAATGAAGCAGGCAATG CTATTCCCACAACTTGCTCAAGCAGGAGATGCTTTCCATCAAGTTTTGAATGGACTTGCTCGAAAATTGTCTCATGATAGAAATGTTTACCTGAAGTCTG GTGAGAAGATCTTAAACTGGACTGCAGGCCTAGTCGGTGACCTGAAACCTTAG
AA sequence Show only first row Show all	>Potri.015G116700.4 pacid=42776605 polypeptide=Potri.015G116700.4.p locus=Potri.015G116700 ID=Potri.015G116700.4.v4.1 annot-version=v4.1 MQKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPKEGDWFYTPVYTTCDLTLNSLYLPFKSPRMIRSATQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQ EEKAIERGILPLLQHATLVQTFGQRNHVCLKDGSITVPSYAPPQKMQTHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDIS TEHPTTYYEDMQQAVFCLCPLSWAPWSPRLVEALIFGYIPVIIVDDIVLPFADAIPWEEIGVFVDEKDVPNLDTILTSIPPEVILRKQRLLANPSMKQAM LFPQLAQAGDAFHQVLNGLARKLSHDRNVYLKSGEKILNWTAGLVGDLKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.015G116700 [exp]	0	1
AT2G46090			Diacylglycerol kinase family p...		Potri.002G162900 [exp]	5.38	0.7026
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.012G123550 [exp]	9.00	0.6718
AT4G02840			Small nuclear ribonucleoprotei...		Potri.005G207900 [exp]	12.24	0.6981
AT5G25580			unknown protein		Potri.006G244800 [exp]	16.97	0.6397
AT1G27070			5'-AMP-activated protein kinas...		Potri.008G194300 [exp]	20.73	0.6884
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.008G222700 [exp]	28.46	0.6850
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	29.54	0.6924
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.016G116700 [exp]	32.52	0.6114
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.002G165900 [exp]	40.34	0.6419
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.001G073300 [exp]	46.47	0.6176	Pt-ARPC2.2

Compare expression of checked genes

Potri.015G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.