Plant FIBer expression Database

Potri.015G116900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45110 169 / 3e-50 ATNPR3, NPR3 NPR1-like protein 3 (.1)
AT4G19660 163 / 5e-48 ATNPR4, NPR4 NPR1-like protein 4 (.1)
AT4G26120 97 / 9e-24 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
AT1G64280 94 / 6e-23 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G117200
[exp]
304 / 7e-102 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1)
Potri.012G118300
[exp]
293 / 6e-99 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1)
Potri.012G118500
[exp]
295 / 3e-98 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1)
Potri.015G113466
[exp]
183 / 7e-61 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1)
Potri.002G056500
[exp]
189 / 1e-57 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1)
Potri.005G206100
[exp]
171 / 5e-51 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1)
Potri.006G148100
[exp]
134 / 3e-37 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1)
Potri.015G114501
[exp]
63 / 8e-14 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040620
[exp]
249 / 2e-80 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1)
Lus10018289
[exp]
248 / 4e-80 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1)
Lus10038337
[exp]
186 / 1e-56 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1)
Lus10036200
[exp]
159 / 2e-46 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1)
Lus10024842
[exp]
122 / 2e-33 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
Lus10018756
[exp]
122 / 1e-32 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12313 NPR1_like_C NPR1/NIM1 like defence protein C terminal
Representative CDS sequence
>Potri.015G116900.1 pacid=42776576 polypeptide=Potri.015G116900.1.p locus=Potri.015G116900 ID=Potri.015G116900.1.v4.1 annot-version=v4.1
ATGAGAAGGAATCCAATGGCTGGGAGTGCCTCCATCACTTCCCATACAATGGATGATGATCTTCACATGAAGCTGCTATACCTGGAGAACAGAGTGGCAT
TTGCAAGATTATTCTTCCCTACTGAAGCCAAGCTAGCCATGGACATTGCACATGCTGCACCAACACCAGAATTTGCTGGTCTTGCTGCATCAAAAGGTTC
TGACGGGAATTTGAGGGGGGATGACCTAGATGAGACACCAATAATGCAGAACATAAGACTTCGTTCTAGGATGGAAGCCCTAATGAAAACAGTTGAAATG
GGCCGGCGATACTTCCCCAATTGCTCCGAAGTGCTCGATAAGTTCATGGAGGATGACCTTCCTGATTTGTTTTACCATGAAAAGGGTACCCCAGATGAAC
AAAGAATAAAGAGGACACGTTTCATGGAGCTTAAAGAGGATGTTCAGGGGGCATTTATCAGGGACAAGGCTGAGATTAACACCACTAATTGTTGA
AA sequence
>Potri.015G116900.1 pacid=42776576 polypeptide=Potri.015G116900.1.p locus=Potri.015G116900 ID=Potri.015G116900.1.v4.1 annot-version=v4.1
MRRNPMAGSASITSHTMDDDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAAPTPEFAGLAASKGSDGNLRGDDLDETPIMQNIRLRSRMEALMKTVEM
GRRYFPNCSEVLDKFMEDDLPDLFYHEKGTPDEQRIKRTRFMELKEDVQGAFIRDKAEINTTNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Potri.015G116900
[exp]
0 1
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Potri.015G113466
[exp]
2.44 0.8837
AT5G13190 AtGILP GSH-induced LITAF domain prote... Potri.001G061900
[exp]
2.82 0.8625
AT4G21570 Protein of unknown function (D... Potri.001G405700
[exp]
3.16 0.8341
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.015G072400
[exp]
4.00 0.7885
AT2G28230 TATA-binding related factor (T... Potri.006G143400
[exp]
4.58 0.8106
AT1G63830 PLAC8 family protein (.1.2.3) Potri.001G101100
[exp]
4.89 0.8162
AT3G52850 VSR1;1, GFS1, B... VACUOLAR SORTING RECEPTOR 1;1,... Potri.006G108800
[exp]
7.93 0.7820 Pt-VMVSR.1
AT2G34585 unknown protein Potri.011G084300
[exp]
9.38 0.7485
Potri.003G152800
[exp]
9.79 0.7711
AT1G30760 FAD-binding Berberine family p... Potri.011G161300
[exp]
10.58 0.7682

Potri.015G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.