Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 52 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118600 [exp] 1463 / 0 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 224 / 3e-60 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 215 / 1e-58 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.002G021600 [exp] 147 / 7e-36 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 144 / 9e-35 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 113 / 3e-25 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 61 / 3e-09 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036201 [exp] 749 / 0 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 714 / 0 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039197 [exp] 222 / 2e-59 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 221 / 4e-59 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10013551 [exp] 152 / 3e-37 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 137 / 1e-32 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 109 / 6e-24 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 96 / 9e-20 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G117300.10 pacid=42775896 polypeptide=Potri.015G117300.10.p locus=Potri.015G117300 ID=Potri.015G117300.10.v4.1 annot-version=v4.1 ATGGCTTCCTTGAATCAGTTGCTCGCTGAGGAAGGATTTGAGCACAGAAGTTTCTTGAGAAATAGAGCACAAGTGAAGCCCAGAGACAGATTAATTAGAC CAGAAGAGTCTGTAATATTGCCTATACATGTTTGCCATGATCAGAAAAGACCCCATTCTTCCAAGAAGAAGACCGATAAGGCCTCCACTCGAAAAGGGTC GTCGATATTTTCATCGAGGAGAGTGAGTTCGGATACGGAGAGATTGCAGTCTAAGTCATTGTTGAGGGGAGAAGATCCTGCAATCGATGAAATAGCTATT AGAGCAGTGGTATCTATACTCAGTGGTTATATAGGCAGGTACACAAAAGATGTGAGTTTTAGGGAGATGATTAGAGAGAAGTGCAACTCTTGCTTGGTGG GAAGAAGCATGGGTTCGGATGATGGGATTTTTGGGAATATGGAGTCGGGAATGGAAAGCATTGAGAAGTTGGTTGAAGAGCAAGCAACAAGAAAGGAGGT GAAGGTGGAGTCATTGAAAAACCCAATCCAGCTTTTGAACATTGTTGCTTCATTGAATTCTAAGAAATCCGGGAATGGTTCCACTTGTGGTGTTCCCAAT TCACATCTCTCAGCTTGTGCTCAATTGTACTTGTCTATTGTTTACAAGCTAGAGAAGAATGACAGGACATCTGCCAGGCATCTACTTCATGTTTTTTGCG ATGCGCCATTTTTAGCAAGAACTCACTTGCTTCCTGATCTTTGGGAGCATTTCCTTCTTCCCCATCTTCTTCATCTTAAAGTTTGGTACCATGAGGAACT TGAATTTCTCTCAGGCTCCCAGCATGTTGAGATGGAAAGAAAGGTGAAAACTTTGAGTAAGGTCTATAATGACCAGATGGATATGGGAACAATCCAGTTT GCTCTTTACTATAAAGAGTGGCTCAAGGTTGGGGCTAAAGCTCCTTCTGTTCCAGCCATCCCTTTGCCATCTAGATCAAGTTATGCACCATCAATGAGGA GATCATCGGATTCTTATAACTCACGTTCCTCCATCAACACAAACTTATACCGAGCTGTGTTTGGCCCCACGCTAGAACGCCGATCGATGGACTTCGATTC TCGAAATAGAGCTTCAATGGATACATGGAGCATAGAGGAAGAAAAGGTGTGCATAGATGAATACAAAGATTCCAATTATGCTACTTATAAGAAGACGAGG AATCCTCGAAGGCCATCGAGTCAAAATTATGGAATTTCGAAAAATGATATATGGCATGAGCCTCAGAAATCAGACTATTTTAGGCTCTTTTCCTGCCAAA GTGTGTTATCAGAATGCCTGGTTAATGGAAACATCATAGTCAGGAGTAATTCAATCAGGAATGAAGAGACAATCCATCTCCCTCCTAGTGATCTAAGTAG AGCCATAAGCACTATTTGCTCCTCAGATAGTCTAGCTGAGTGTGAAATTGCAATCCATGTCACTGCCAAAGCCTGGTTGGACTCACCTGGCAGTAACGTA ATTGAAGGTGCTTTATCAAAGGTACCTGTGATTGAAGGGTTGCTTGAGGTCTTGTTTGCTTCCACTGATGATCAAGTTCTAGAGCTGGCAATATCTATTC TCGCACAGCTTGTAACAAGAAATGAAGCAAATAGGCTAATAGTACTAAACGCTGATCCACAGCTCAAGATCTTCATGAAACTCTTAAAAAGTAGCAGTTT ATTTCTCAAAGCTGCTGTTCTGCTTTACCTATCGAAGCCGAAGGCAAAACAGATGGTTCCTATCGAGTGGGTAGCACTAGTCCTTCGAGTTTTAGAGTTT GGAGGCCAGTTGCAGACCTTATTCACAGTAAGGTGCATGCCTCAAAAGGCAGCAATGTACTTCTTAGACCAACTTCTAACAGGTTTTGATGAAGATAGGA ACTTAGAGAATGCTAGTCAAGTTGTTTCCCTGGGAGGATTGAGCTTGTTGGCAAGGACCTTTGAAGTAGGGGACGTTATCGAGAGAAATCATGCTGCTAC GCTCATGTTATGTTGCATTCGAGCTAATGGGAGCTGTCGGAACTACTTAGCTGACAATTTGAACAAGACTTCTCTCCTTGAGCTCATTGTTCTTGGTATC CAGAAGAATTATAATGGGTGTGCATTCAATTTACTAGCGGAGCTACTGTGCCTGAGCAGAAGAACACGGATCGTTAAATTCTTAACGGGACTCAATAATG GATGGGGTGGCTTGAACACCATGCACATCTTTTTAGTCTATCTCCAGAGATCTTCGCCTGAAGAACGCCCTCTGGTTGCGGCAGTTCTCTTACAGCTTGA GCTTCTGGGAGATCTTTCGAAGTCCAGTTTGTATAGGGAAGAAGCAGTTGAGGCAATCACAGAATCTTTAGATTGCCCCAGCACAAAGGTTCAAGAACAA TCCTCAAAAGCTCTCTTGATGTTGGGAGGCTGTTTTTCATACAATGGAGAGGCGACCGCAGAAGATTGGCTTTTACAACAAGCAGGCTTCCATGAGAGAT TACGAGGATCATTTCGACAAAAGGAAATGTTTGATGGGAACTTGAATGAAGAGGAAGATGCAATGGAAGATTGGCAAAGGAAAGTAGCAGTAGTCTTGCT CAACAGTGGCAGCAAGAGTTTTTTGGCTGCCCTTTCGAATTCCATTGCCAATGGCATCCCAAATTTAGTGCAATCAAGCCTCTTCACTGTTGCATGGATG AGCAGAATCCTGCTTCCAGTAACAAATGAAAATTCAATCTCAAAATTTCAGCCGCAACTGCTAGAATTACCACATTATGACAAAGCTCTAATTGAAAGAG TGAGTCCATATTTTTCACCGCAGCATCTCATAAAAAGTTCAGAATATCTCTCCATGCTTTCAACATTGAATAAAGAGTTGATAGATCCTCTTCGAAATCC TTTGTGA
AA sequence Show only first row Show all	>Potri.015G117300.10 pacid=42775896 polypeptide=Potri.015G117300.10.p locus=Potri.015G117300 ID=Potri.015G117300.10.v4.1 annot-version=v4.1 MASLNQLLAEEGFEHRSFLRNRAQVKPRDRLIRPEESVILPIHVCHDQKRPHSSKKKTDKASTRKGSSIFSSRRVSSDTERLQSKSLLRGEDPAIDEIAI RAVVSILSGYIGRYTKDVSFREMIREKCNSCLVGRSMGSDDGIFGNMESGMESIEKLVEEQATRKEVKVESLKNPIQLLNIVASLNSKKSGNGSTCGVPN SHLSACAQLYLSIVYKLEKNDRTSARHLLHVFCDAPFLARTHLLPDLWEHFLLPHLLHLKVWYHEELEFLSGSQHVEMERKVKTLSKVYNDQMDMGTIQF ALYYKEWLKVGAKAPSVPAIPLPSRSSYAPSMRRSSDSYNSRSSINTNLYRAVFGPTLERRSMDFDSRNRASMDTWSIEEEKVCIDEYKDSNYATYKKTR NPRRPSSQNYGISKNDIWHEPQKSDYFRLFSCQSVLSECLVNGNIIVRSNSIRNEETIHLPPSDLSRAISTICSSDSLAECEIAIHVTAKAWLDSPGSNV IEGALSKVPVIEGLLEVLFASTDDQVLELAISILAQLVTRNEANRLIVLNADPQLKIFMKLLKSSSLFLKAAVLLYLSKPKAKQMVPIEWVALVLRVLEF GGQLQTLFTVRCMPQKAAMYFLDQLLTGFDEDRNLENASQVVSLGGLSLLARTFEVGDVIERNHAATLMLCCIRANGSCRNYLADNLNKTSLLELIVLGI QKNYNGCAFNLLAELLCLSRRTRIVKFLTGLNNGWGGLNTMHIFLVYLQRSSPEERPLVAAVLLQLELLGDLSKSSLYREEAVEAITESLDCPSTKVQEQ SSKALLMLGGCFSYNGEATAEDWLLQQAGFHERLRGSFRQKEMFDGNLNEEEDAMEDWQRKVAVVLLNSGSKSFLAALSNSIANGIPNLVQSSLFTVAWM SRILLPVTNENSISKFQPQLLELPHYDKALIERVSPYFSPQHLIKSSEYLSMLSTLNKELIDPLRNPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06880			Transducin/WD40 repeat-like su...		Potri.015G117300 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	1.41	0.9639
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.001G214700 [exp]	1.41	0.9600
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.014G075200 [exp]	2.44	0.9545	Pt-ANL2.2
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	3.74	0.9488	F2KP.3
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	4.24	0.9351	CAT5.1
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	4.89	0.9538
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162500 [exp]	4.89	0.9518
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	6.08	0.9258
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	7.74	0.9345
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	10.58	0.9474

Compare expression of checked genes

Potri.015G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.