Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31280 407 / 9e-131 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 364 / 7e-113 AGO3 ARGONAUTE 3 (.1) AT1G69440 191 / 2e-51 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 181 / 4e-48 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 171 / 5e-45 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 168 / 5e-44 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT5G21150 125 / 6e-30 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 103 / 7e-23 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 97 / 6e-21 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 90 / 1e-18 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118700 [exp] 683 / 0 AT1G31280 910 / 0.0 argonaute 2, Argonaute family protein (.1) Potri.010G163800 [exp] 199 / 2e-54 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.012G037100 [exp] 174 / 5e-46 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 173 / 1e-45 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.009G001500 [exp] 172 / 3e-45 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G081300 [exp] 171 / 4e-45 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 169 / 4e-44 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.001G213700 [exp] 169 / 4e-44 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 167 / 1e-43 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018290 [exp] 476 / 7e-157 AT1G31280 907 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10040619 [exp] 477 / 1e-155 AT1G31280 923 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10037136 [exp] 206 / 1e-56 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 201 / 3e-55 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036794 [exp] 201 / 9e-55 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10017983 [exp] 177 / 1e-46 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 177 / 1e-46 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 174 / 6e-46 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 158 / 1e-40 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 158 / 1e-40 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0638 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0638 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute
Representative CDS sequence Show only first row Show all	>Potri.015G117401.1 pacid=42775472 polypeptide=Potri.015G117401.1.p locus=Potri.015G117401 ID=Potri.015G117401.1.v4.1 annot-version=v4.1 ATGGAGAGAGCAGGCTATCGAGGCGGAGGAAGAGGTGGTCATGATGGTAGGTACGGTGGTGGTAGAGGAGGTTATGGAGGGGGAGGAAGAGATGGTGGTC GTAGTGGCGGGTATGATGGTGGTCGTGCTAGCGGGTATGGTGGCGGTGGTCGAGCTGGCGGGTATGATGGTACTGGTCGTGCTGGCGGGTATGACGGTGC TGGTCGTGCTGGCGGTCCACGTCAGCATTGGAGGCCAAACAATCAAGGTAGCGGTGGTGGTCCTCCACCCGGTCAAAGTGTTGGTGGACCGGGGGGCACA AGGGGTGGTGGATCACATTCAGAGCGGCATGGAGGTGCTCCAACCAGTCAAAGTGGTGAAATGGGGCCTAGAAGGGGCTGGGAAGTCCGTGGTGGTAGTG AAGAAGGAAGGAGTGACCAGGTGTCAGAAACTGGGGGAGGAAAGGGACCTTCAAGACCTGTTAATGTGAGTCCATCTAGCAATTGGGCTTCTGGTTCTAG TTCTTCTGGTGATCTTGAACCTAGTCCTAATGTGCCAAAAGGATTGGCTTCTGTCACTGCTAATAGGATTAGTCCAGTTCTACGACCAGATAAAGGTGGC AAACTGGCTGTCCGAACTCCTAGACTTCTTGTAAATCATTTTCTTGTCAAGTTCAATCCTAAGAGCATCATACGGCATTATGATGTTAATATCAAGCAAG AAGTGCTTCCAAAGCATGGCAGGCCTGGGAAAATTTCAAAGTCCAATTTAGCAATGATCAGGGATAAGTTATTTGCTGATGATCCTTCTTCGTTTCCTCG TGCTATGACTGCTTATGACGGGGAGAAGAACATTTTCAGTGCAGTTTCCTTGCCCACTGGAACATTTAAAGTGCAGGTCTCTGAGGCAGAAGATGCCAAA CCACGTTCTTACCTGTTTACCATAAAGCTTGTGAATGAACTTGAGCTGCACAAGCTGAAGGATTACTTGGACGGGAAACTTCGCTCAACACCTCGTGACA TATTGCAAGGGATGGATGTCGTGGTGAAGGAGCACCCAGCTAGGACAATGATCTCTGTTTCCCGTAGCTTCCATTCTGTTAGAGATCATCAAATTCACCT TGGGCATGGAATCATAGCATCTAGAGGGTGCCAACATAGCCTCAAACCGACCTCCCAAGGCATAGCTTTATGCTTGGACTATTCTGTTCTGTCATTTCAT GAGCCACTTTCTGTGATAGAATTCTTGACAAAACATATTTCTGGGTTTAATTTAAATAATTTTAGAAGCTTTAGGAGGGCTGTGGAAGGTGTGCTGAAGG GACTGAAAGTTAGAGTGACTCACCGTGTCACCAAACAAAAATATGTTATTACAGGGTTGACGAGAGATGACGCTCAATATATTACATTTCCTCAAGAAGA TCCAGATGGCAAGGCTTCGCAGAATGTTAGGCTTGTTGAATATTTCAGGCAAAAATATCACAGAGATATAGTGCATCAAGATATCCCTTGCCTAGAGATG AAAAGCAAGATGAAGAACTATGTACCAATGGAGTTCTGTGTCTTGGTTGAGGGGCAAGTATTTCCAAAAGAGTATCTGAAGGAAACTGAAGCCAAGATGT TGAAGAAATTCTCACTAGCAAATCCAAAGGATAGACAGAAAACAATATGCAGGATGGTGCAGGATGGAGATGGACCTTGTAGTGGAGAGATTATCCGAAA TTTTGGTATCGAAGTCAGCAAGAATATGACCTCATTGATTGGTCGTGTGATTGGGCGGGCCACCTGA
AA sequence Show only first row Show all	>Potri.015G117401.1 pacid=42775472 polypeptide=Potri.015G117401.1.p locus=Potri.015G117401 ID=Potri.015G117401.1.v4.1 annot-version=v4.1 MERAGYRGGGRGGHDGRYGGGRGGYGGGGRDGGRSGGYDGGRASGYGGGGRAGGYDGTGRAGGYDGAGRAGGPRQHWRPNNQGSGGGPPPGQSVGGPGGT RGGGSHSERHGGAPTSQSGEMGPRRGWEVRGGSEEGRSDQVSETGGGKGPSRPVNVSPSSNWASGSSSSGDLEPSPNVPKGLASVTANRISPVLRPDKGG KLAVRTPRLLVNHFLVKFNPKSIIRHYDVNIKQEVLPKHGRPGKISKSNLAMIRDKLFADDPSSFPRAMTAYDGEKNIFSAVSLPTGTFKVQVSEAEDAK PRSYLFTIKLVNELELHKLKDYLDGKLRSTPRDILQGMDVVVKEHPARTMISVSRSFHSVRDHQIHLGHGIIASRGCQHSLKPTSQGIALCLDYSVLSFH EPLSVIEFLTKHISGFNLNNFRSFRRAVEGVLKGLKVRVTHRVTKQKYVITGLTRDDAQYITFPQEDPDGKASQNVRLVEYFRQKYHRDIVHQDIPCLEM KSKMKNYVPMEFCVLVEGQVFPKEYLKETEAKMLKKFSLANPKDRQKTICRMVQDGDGPCSGEIIRNFGIEVSKNMTSLIGRVIGRAT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117401 [exp]	0	1
AT5G42120			Concanavalin A-like lectin pro...		Potri.005G189500 [exp]	1.73	0.9370
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.019G062266 [exp]	3.46	0.9203
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.003G178700 [exp]	8.00	0.9219
					Potri.004G163032 [exp]	9.32	0.8678
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.002G169600 [exp]	18.46	0.8796
					Potri.001G255904 [exp]	23.10	0.8984
					Potri.007G117400 [exp]	28.91	0.8552
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	42.14	0.8767
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	46.31	0.8776
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	53.10	0.8739

Compare expression of checked genes

Potri.015G117401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.