Plant FIBer expression Database

Potri.015G117500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05320 582 / 0 O-fucosyltransferase family protein (.1)
AT3G26370 44 / 0.0003 O-fucosyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G118800
[exp]
841 / 0 AT3G05320 587 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040618
[exp]
674 / 0 AT3G05320 563 / 0.0 O-fucosyltransferase family protein (.1)
Lus10018291
[exp]
673 / 0 AT3G05320 563 / 0.0 O-fucosyltransferase family protein (.1)
Lus10036875
[exp]
44 / 0.0003 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1)
Lus10029239
[exp]
43 / 0.0004 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF10250 O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence
>Potri.015G117500.1 pacid=42776320 polypeptide=Potri.015G117500.1.p locus=Potri.015G117500 ID=Potri.015G117500.1.v4.1 annot-version=v4.1
ATGGACATGCCCTCTAGTTGCAAGTATCCAATGTTCTTCGGCAGAAACTTGAATTCTATAACATGTAAAGGTCTTGCTTTGATTGTGATTGCTCTGTTTC
TTAGAGTTGTGCTGCTTCCTTCATTCTCTGGCTATGGTGGGGTAGATAAAAACAATCTTGATTTGATTCATAGCCGATCTTTGTCCTTGGATTCTGATAA
TGGAATTCGTAAAGAAAAATTCTTAGAAGTTCCTCAGATAGTATGGGGACTAAACAATCAAAAGATAGCATTTGCGAGAGCTTGTCTAACTGCTAGAATG
CTGAATCGGACTCTGCTAATGCCTAGTTTAAGTGCTTCCCTGTTCTATAAGGAAATAGATCGCCTCCAGCCTATTTCCTTCGACAAGGTGTTTCAATTTG
AGAGGTTTAATGCCCTCTGTAATGGATTTGTGCAGTTGGGCCGTTATTCAGATCTTCGGAATCGGACTGGAGTGTATGAGCTTCAGAAGGGAAGTGGGAG
GAAGTGGACAATTGAGAGGGATTTGGATCAATTGAAAGAGTTTAGCGAGGATTCATTTAATGGATACGAGGTAATAAGAATAGTTGGGAAGAACCCCTTT
TTGTGGCATGATCATTGGCCAGTTAAGGACTATGCCAGGGTCTTTGAATGCTTGGTTTTGGTTGATGAGATAACTAAAGAGGCGGATAAAGTTGTGTCTA
AGATTAGAGAAGTAGGAAAAGAGTTGAGGAGCAAATCTCAGTCTGCTCAGGGTGGTGTCGATCCTGATAGTTCTTGGTTGCAGCCAGTGCCTTATGTGGC
GGTTCACATGAGAATAGAGATAGATTGGATGATTCACTGTAAGAAGTTAGAGCAAAGATTAAATGTTAGTGAAATTTGCAGTAGCAAGCAGGAGATCATG
GAGAGAGTAGGGAACATTGTTGGCTTAAAAAGTCCTATTGTTGTTTATCTTGCTGTGGCAGATAGTCTTCTTGAAGATTCTTCTATACTCACCGGGTGGA
AGGAAGGTTTGCTTCCTGTTGAGAAGAAGAAGCTCAGTGTTGATGGAGTTTACAAGAAATACCCATATCTCATTCAGTCAGCAATAGATTATGAAGTTTG
CTCAAAGGCTGATGTATTTGTCGGGAATAGTTTCTCAACATTTTCAAGCCTCATAGCTCTTGAGAGAACACAGAAGATGATTAGAATTGGTGTCACAAGC
TCGTGTGGCGTGGATGTAAGATGGCCTTCATATGCATACAATATATTGGGGGAATCCAATGGTCCTCATAAATGGATGACAAATATGTCTGATTCAAGCC
TCAAAGCAATTAGCTATGGTTCTAATATCATCTCCTGTTGA
AA sequence
>Potri.015G117500.1 pacid=42776320 polypeptide=Potri.015G117500.1.p locus=Potri.015G117500 ID=Potri.015G117500.1.v4.1 annot-version=v4.1
MDMPSSCKYPMFFGRNLNSITCKGLALIVIALFLRVVLLPSFSGYGGVDKNNLDLIHSRSLSLDSDNGIRKEKFLEVPQIVWGLNNQKIAFARACLTARM
LNRTLLMPSLSASLFYKEIDRLQPISFDKVFQFERFNALCNGFVQLGRYSDLRNRTGVYELQKGSGRKWTIERDLDQLKEFSEDSFNGYEVIRIVGKNPF
LWHDHWPVKDYARVFECLVLVDEITKEADKVVSKIREVGKELRSKSQSAQGGVDPDSSWLQPVPYVAVHMRIEIDWMIHCKKLEQRLNVSEICSSKQEIM
ERVGNIVGLKSPIVVYLAVADSLLEDSSILTGWKEGLLPVEKKKLSVDGVYKKYPYLIQSAIDYEVCSKADVFVGNSFSTFSSLIALERTQKMIRIGVTS
SCGVDVRWPSYAYNILGESNGPHKWMTNMSDSSLKAISYGSNIISC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05320 O-fucosyltransferase family pr... Potri.015G117500
[exp]
0 1
AT2G02370 SNARE associated Golgi protein... Potri.003G151800
[exp]
7.74 0.6002
Potri.001G353250
[exp]
8.00 0.5844
Potri.012G017950
[exp]
10.95 0.5753
AT4G10270 Wound-responsive family protei... Potri.019G117632
[exp]
11.13 0.6172
AT1G47056 VFB1 VIER F-box proteine 1 (.1) Potri.014G023500
[exp]
16.94 0.5881
AT2G43250 unknown protein Potri.017G035700
[exp]
21.21 0.5572
AT4G35870 early-responsive to dehydratio... Potri.007G063700
[exp]
34.64 0.5893
AT4G10270 Wound-responsive family protei... Potri.019G117301
[exp]
36.74 0.5717
AT5G24360 AtIRE1b, ATIRE1... ARABIDOPSIS THALIANA INOSITOL ... Potri.005G254000
[exp]
37.52 0.5758
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.003G041650
[exp]
44.59 0.5211

Potri.015G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.