Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19670 660 / 0 RING/U-box superfamily protein (.1.2) AT5G60250 195 / 7e-55 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25360 184 / 3e-53 RING/U-box superfamily protein (.1) AT2G25370 181 / 3e-50 RING/U-box superfamily protein (.1.2) AT3G45470 155 / 3e-44 IBR domain containing protein (.1) AT5G37560 159 / 3e-43 RING/U-box superfamily protein (.1) AT3G45580 156 / 2e-42 RING/U-box protein with C6HC-type zinc finger (.1) AT3G53690 154 / 2e-42 RING/U-box superfamily protein (.1) AT3G14250 138 / 1e-36 RING/U-box superfamily protein (.1) AT2G26135 134 / 1e-34 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119000 [exp] 893 / 0 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 192 / 9e-55 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G104700 [exp] 193 / 1e-54 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G187700 [exp] 166 / 5e-47 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 161 / 2e-44 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 155 / 7e-43 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 114 / 2e-28 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 113 / 3e-28 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 110 / 1e-27 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038341 [exp] 789 / 0 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 766 / 0 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10018293 [exp] 342 / 7e-113 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10040616 [exp] 333 / 2e-109 AT4G19670 278 / 3e-88 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 213 / 2e-62 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 164 / 5e-44 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000412 [exp] 159 / 5e-44 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 154 / 6e-42 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 129 / 7e-34 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10022063 [exp] 119 / 3e-30 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G117600.1 pacid=42775718 polypeptide=Potri.015G117600.1.p locus=Potri.015G117600 ID=Potri.015G117600.1.v4.1 annot-version=v4.1 ATGGAGGGTCAAGTAGCTTTTAGTGATGGGTCTTCAGCGAGTTTAGTTAGGGGGGAAATGAAATTGGAGGAGGACGAGGAAGATTTTCGTAGTTGTTGTG AAGATGAAGAAGTGTGGAAAGAGATTGAAGATATAGTGAAGGAAGAGCCGAAGGAAGATCTTGATGAATTTTCAGTGAAGATGTTTTTCAAGGGGATGTC AGTTGCTGAGGATGGGGGCTCTGCTTCTGGGTTCTCTGGAATTGGTGTTGTCATGGAAAGGACTGAATATGTTCCTGTTATTCAGGTGCAAAAGAAGCTC GACTTCTATGTGGATGAATCTGTTGCTGACTATTTGGCTCTCATGGATGGTCTTGCTGAGGCCATGCAGAACAATATCCGCCGTGTGTATGCGTTCACTG ACTCTGAACTGTTATATGATCAGATAACAAACGAGGAGAAACTTGAGGTTCCACTTCTGATAGCTCTGAGGCAAAGGATACTTGAACATGCCAGCAACCT GGAAGCTTTTGTTTTGAAACTCAGTCCCTGCTGTGATCTTGAGAGGCCATTACACTTAGCACAGGTAGCAGTTGGGGTCGTTTCTTTTCCATCCAATGGG AGCAAATCCCATGATAACTGCTCTATCTGTTGTGAGGATAAGATGTCGCCAATGATGATAACAATGAAATGTTCCCACAAATTCTGCTCACATTGTATGA AGACCTATGTTGATGGAAAAGTACAGTCATCTCAAGTGCCAATCATATGCCCACAGTTGGGATGCAAATATTGCATTTCCATCAATGAATGCAGATCATT TCTTCCTCTCACTTCATATGAATCTCTGGAAAATGCCCTGGCTGAAGCTGATATTCACCATTCTGATAGAATCTACTGTCCCTATCCTAATTGTTCTGTC CTGCTTGATCATCGAGAATGTTTGTCAGCTAGGGTGAGTTCATCAAGTGAGTCTGATAATACCTGTATTGAGTGCCCTGTATGTCGAAGGTTTATCTGTG TGGAATGTGGTGTTCCTTGGCATTCTTCCATGAGGTGTGAAGAGTACCAGAACCTTCCATTAGAAGAGAGGGATGCTGCAGACATTACCTTGCATCTTCT GGCACAAAATAAAAGATGGAGGCGTTGTCAACAGTGCCGCAGGATGATTGAGCTCTCTCAAGGTTGCTCCCATATGACCTGTTGGTGTGGGCATGAGTTC TGTTATTCTTGTGGTGCTGAATATAGGAATGGGCAACAGACCTGTCAATGTGCCTTCTGGGACGAAGAAAATTCCGAAGATTTGGTCACCCAGTCAGCTC AAGAATCAGAACAATGGGCGTGGGAGACTTATAACTCACTGCCCATGCTTATGGATGCTTACTCAGAACAAGAGAGGTCACAGCTGGCACTAATTCAAAG GTTCCTTGCTGGGGGTTTCAGTCTGAGTGACCACCATCCATACCAATCTCCGCCCAGCTGTACAGACTCATATGTAGATGCCATGAAGGATCTTCATCAG CTTCCTTGGCTTGAGAGGTTTGTCTCTGTAATAAGCGACAACTACTACGAAGACTATATCCAATGA
AA sequence Show only first row Show all	>Potri.015G117600.1 pacid=42775718 polypeptide=Potri.015G117600.1.p locus=Potri.015G117600 ID=Potri.015G117600.1.v4.1 annot-version=v4.1 MEGQVAFSDGSSASLVRGEMKLEEDEEDFRSCCEDEEVWKEIEDIVKEEPKEDLDEFSVKMFFKGMSVAEDGGSASGFSGIGVVMERTEYVPVIQVQKKL DFYVDESVADYLALMDGLAEAMQNNIRRVYAFTDSELLYDQITNEEKLEVPLLIALRQRILEHASNLEAFVLKLSPCCDLERPLHLAQVAVGVVSFPSNG SKSHDNCSICCEDKMSPMMITMKCSHKFCSHCMKTYVDGKVQSSQVPIICPQLGCKYCISINECRSFLPLTSYESLENALAEADIHHSDRIYCPYPNCSV LLDHRECLSARVSSSSESDNTCIECPVCRRFICVECGVPWHSSMRCEEYQNLPLEERDAADITLHLLAQNKRWRRCQQCRRMIELSQGCSHMTCWCGHEF CYSCGAEYRNGQQTCQCAFWDEENSEDLVTQSAQESEQWAWETYNSLPMLMDAYSEQERSQLALIQRFLAGGFSLSDHHPYQSPPSCTDSYVDAMKDLHQ LPWLERFVSVISDNYYEDYIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	0	1
AT2G28390			SAND family protein (.1)		Potri.004G211200 [exp]	3.46	0.7495
AT2G36330			Uncharacterised protein family...		Potri.015G075100 [exp]	6.92	0.7266
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	7.14	0.7829
AT5G53140			Protein phosphatase 2C family ...		Potri.012G002100 [exp]	8.36	0.6977
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	8.77	0.7257	Pt-ARF2.1
AT1G09320			agenet domain-containing prote...		Potri.013G006900 [exp]	9.21	0.7314
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.007G035200 [exp]	11.74	0.7396	Pt-XLG.2
AT5G06440			unknown protein		Potri.016G067000 [exp]	14.69	0.6744
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	14.69	0.7345
AT3G14830			unknown protein		Potri.003G026500 [exp]	21.02	0.6923

Compare expression of checked genes

Potri.015G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.