Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31260 436 / 3e-154 ZIP10 zinc transporter 10 precursor (.1) AT4G19690 433 / 5e-153 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G19680 384 / 9e-134 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G04032 374 / 1e-129 ZIP7 zinc transporter 7 precursor (.1) AT1G05300 305 / 2e-102 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 302 / 1e-101 ZIP3 zinc transporter 3 precursor (.1) AT3G12750 292 / 2e-97 ZIP1 zinc transporter 1 precursor (.1) AT5G45105 282 / 2e-94 ZIP8 zinc transporter 8 precursor (.1.2) AT1G10970 272 / 5e-89 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT5G62160 255 / 6e-83 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117900 [exp] 588 / 0 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.010G134300 [exp] 406 / 2e-142 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.006G006800 [exp] 342 / 3e-117 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 329 / 2e-112 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G135400 [exp] 327 / 2e-111 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.010G173300 [exp] 326 / 9e-111 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 315 / 1e-106 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 312 / 2e-105 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.001G279300 [exp] 230 / 1e-73 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040615 [exp] 451 / 9e-160 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10041613 [exp] 345 / 4e-118 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10041647 [exp] 345 / 4e-118 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10024107 [exp] 343 / 1e-117 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10006935 [exp] 278 / 2e-92 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 262 / 8e-86 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 236 / 5e-77 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10014063 [exp] 212 / 3e-66 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10031307 [exp] 169 / 4e-52 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 111 / 9e-30 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.015G117700.1 pacid=42776473 polypeptide=Potri.015G117700.1.p locus=Potri.015G117700 ID=Potri.015G117700.1.v4.1 annot-version=v4.1 ATGTGTAGAAGAACAAGCTCTTGCAATGACAAAGCTAGAGCTTTAACCCTAAAGATAATAGCCATTGTCTCTATCTTGGTTACTAGCATGATAGGTGTAA GTGCACCTCTTTTTACACGTTCAATCCCTGCTTTACACCCAGATCGAAGCCTTTTGGTGATTGTTAAAGCCTTTGCTGCTGGTATCATTCTTGCAACTGG GTTCATGCATGTGTTACCAGATTCTTTTGATATGTTATCTTCAAGTTGTTTGCCAGAAAATCCATGGCACAAGTTCCCTTTTACTGGGTTTGTAGCAATG TTATCTGCCATACTGACACTAATGGTGGACTCATTGGCCACTAGTGTGTATAGCAAGAAGTCTACCGTTGGAGTTAACCCTGAGAGCATTACACATGGTG CTGAACCAGATGAAGAGATGGCTGTTGGATATTTCCATGGCCATGGCAACGGTCATGGACACCATTATGAGGCCAAACTTGCTGGTGGTGCAAAACAATT GCTTCGGTACCGGGTTGTTGCCATGGTGTTAGAATTGGGCATCATTGTGCATTCAGTTGTGATAGGCCTCTCTCTTGGAGCCTCAAGCAACACTTGTACA ATTAAGGGCCTTGTAGCTGCTCTTTGCTTCCATCAAATGTTTGAAGGAATGGGTCTTGGTGGTTGCATTCTCCAGGCTGAGTACAAGCCTTTGAAGAAGG CAGTCATGGCATTTTTCTTCGCAGTAACAACTCCTTTCGGAATTGCAATTGGCATTGCACTGTCCAAAATGTACAAGGAAAACAGTCCTAATGCTTTGAT CACTGTTGGTTTGCTCAACGCATCATCTGCTGGACTCTTGATTTACATGGCATTGGTTGATCTCCTAGCTGCCGACTTTATGGGTCCAAAATTGCAGGGT AGCATTAAGCTCCAGGTTAAGTCTTACATGGCTGTACTTTTGGGAGCTGGTGGCATGTCTCTAATGGCAAAATGGGCATGA
AA sequence Show only first row Show all	>Potri.015G117700.1 pacid=42776473 polypeptide=Potri.015G117700.1.p locus=Potri.015G117700 ID=Potri.015G117700.1.v4.1 annot-version=v4.1 MCRRTSSCNDKARALTLKIIAIVSILVTSMIGVSAPLFTRSIPALHPDRSLLVIVKAFAAGIILATGFMHVLPDSFDMLSSSCLPENPWHKFPFTGFVAM LSAILTLMVDSLATSVYSKKSTVGVNPESITHGAEPDEEMAVGYFHGHGNGHGHHYEAKLAGGAKQLLRYRVVAMVLELGIIVHSVVIGLSLGASSNTCT IKGLVAALCFHQMFEGMGLGGCILQAEYKPLKKAVMAFFFAVTTPFGIAIGIALSKMYKENSPNALITVGLLNASSAGLLIYMALVDLLAADFMGPKLQG SIKLQVKSYMAVLLGAGGMSLMAKWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Potri.015G117700 [exp]	0	1
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	3.46	0.9897	Pt-ZIP6.4
AT1G34300			lectin protein kinase family p...		Potri.006G091400 [exp]	6.55	0.9320
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	7.34	0.9873	Pt-NRAMP1.4
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	8.48	0.9869
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	10.90	0.9850
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	10.95	0.9852
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177501 [exp]	12.96	0.9811
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	13.03	0.9818
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009100 [exp]	14.96	0.9786
AT4G20800			FAD-binding Berberine family p...		Potri.001G459100 [exp]	15.00	0.9574

Compare expression of checked genes

Potri.015G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.