Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45100 259 / 2e-85 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT3G12920 229 / 4e-73 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT4G19700 221 / 2e-70 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 191 / 6e-58 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT1G60610 109 / 4e-27 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G32740 105 / 4e-26 SBP (S-ribonuclease binding protein) family protein (.1) AT1G45976 103 / 5e-25 SBP1 S-ribonuclease binding protein 1 (.1) AT1G10650 101 / 7e-25 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G35070 96 / 7e-23 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 90 / 2e-20 SBP (S-ribonuclease binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119200 [exp] 494 / 2e-177 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G439600 [exp] 250 / 3e-81 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 243 / 1e-78 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.003G085800 [exp] 117 / 5e-30 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.004G175500 [exp] 115 / 5e-30 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.009G135400 [exp] 113 / 3e-29 AT4G35070 135 / 6e-39 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G148600 [exp] 114 / 5e-29 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.010G042200 [exp] 106 / 3e-26 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 105 / 6e-26 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018294 [exp] 277 / 1e-91 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10040613 [exp] 271 / 2e-89 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 200 / 5e-62 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10031202 [exp] 184 / 8e-56 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10014118 [exp] 109 / 1e-28 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 110 / 8e-28 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 108 / 8e-27 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 107 / 1e-26 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 106 / 1e-26 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 105 / 5e-26 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.015G118000.1 pacid=42775724 polypeptide=Potri.015G118000.1.p locus=Potri.015G118000 ID=Potri.015G118000.1.v4.1 annot-version=v4.1 ATGGCAGTTGAAACTCCTCATATGAGCCTCAATTTCCCTTCACAACTTATCATAAACAGGGATCTTGTGAAAGCAAATCAAGCAAACATGAATTTATACA ACACCCAGATGGATTCTGGCCTTGTTTTCAATGAACCAGTGCCTGAAACACTCATGTCGTTCTATCAGTCTTCTCTTGGTTGTGACCCAATTTCTGCTGC TAAGGCATCTAATAAAGATGATAGTAGTCTCACCTACAATGTTCCTGCTGTTGCTGCTCCAAGAAAGAGGGCTAGAGACTCGATCAATGATGACAACTTT GATGCTTTTCATGCCTCTCAAAAGACCAAAGTCTCTCCTTTATCTTCTTTTATTGATCACGATATCCTCTTTCAGATCCAACAACAGCAATCTGAAATCG ACCGTTTCATTGATGATCATAATCAGAAAGTTAGAATGGAACTTGAAGAGAGGAAAAAGAGGCAATCAAGAATGTTGGTATCAGCAATACAAGAAGGAAT GATTAAGAAAGTGAAAGAGAAAGACGAAGAGATTCAAAGAATGGGAAAAATAAACTGGTTTCTTCAAGAAAAAGCGAAGAGTTTATACGTAGAGAATCAA ATTTGGAGGGATTTAGCACAAGCCAATGAGGCCACAGCAAATTCATTACGGAGCAATTTAGAACAAGTCTTGGCGCACGCAAGTGGTGGCGCTGCCACTC TGGCAGATGATGCAGAATCCAGTTGCTGTGGAAGTAGTGATCATGGGAGGTGCACGTTAGCTGGTGGAGAAGAGGGTGCGGTGAAGGATAAGATGGTAGT GGTTAAGGATAATCTTAACCACAACAGGATGTGTAGAAAGTGTGGGGAGAGGGAGTCAAGTGTGCTGCTGCTGCCGTGCAGGCATCTTTGCCTGTGTACA TTATGTGGGTCCAATCTGATTGGTTCTTGCCCAGTATGTGATTCTGTCATGACTGCTAGTGTCCATGTTAACATGTCTTGA
AA sequence Show only first row Show all	>Potri.015G118000.1 pacid=42775724 polypeptide=Potri.015G118000.1.p locus=Potri.015G118000 ID=Potri.015G118000.1.v4.1 annot-version=v4.1 MAVETPHMSLNFPSQLIINRDLVKANQANMNLYNTQMDSGLVFNEPVPETLMSFYQSSLGCDPISAAKASNKDDSSLTYNVPAVAAPRKRARDSINDDNF DAFHASQKTKVSPLSSFIDHDILFQIQQQQSEIDRFIDDHNQKVRMELEERKKRQSRMLVSAIQEGMIKKVKEKDEEIQRMGKINWFLQEKAKSLYVENQ IWRDLAQANEATANSLRSNLEQVLAHASGGAATLADDAESSCCGSSDHGRCTLAGGEEGAVKDKMVVVKDNLNHNRMCRKCGERESSVLLLPCRHLCLCT LCGSNLIGSCPVCDSVMTASVHVNMS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.015G118000 [exp]	0	1
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	4.47	0.8664
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.014G178300 [exp]	8.48	0.8229
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	10.95	0.8482
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	13.78	0.8485
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.001G004100 [exp]	21.16	0.8224	Pt-AGP13.2
AT4G37235			Uncharacterised protein family...		Potri.007G033600 [exp]	23.06	0.8350
AT4G25670			unknown protein		Potri.017G143215 [exp]	23.36	0.8081
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	24.00	0.8117
AT3G54780			Zinc finger (C3HC4-type RING f...		Potri.006G000900 [exp]	27.65	0.7808
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	32.63	0.8065

Compare expression of checked genes

Potri.015G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.