Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31240 138 / 2e-39 Bromodomain transcription factor (.1) AT4G34340 107 / 5e-27 TAF8 TBP-associated factor 8 (.1) AT3G02160 103 / 4e-25 Bromodomain transcription factor (.1) AT5G15570 100 / 4e-24 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119500 [exp] 395 / 3e-140 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1) Potri.006G125200 [exp] 120 / 6e-32 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.004G116200 [exp] 115 / 5e-30 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1) Potri.017G094900 [exp] 115 / 6e-30 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1) Potri.016G092000 [exp] 112 / 1e-28 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040612 [exp] 152 / 4e-45 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1) Lus10018295 [exp] 151 / 1e-44 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1) Lus10013818 [exp] 112 / 1e-28 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1) Lus10026530 [exp] 111 / 2e-28 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF07524 [poplar] [flax] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Potri.015G118200.1 pacid=42775074 polypeptide=Potri.015G118200.1.p locus=Potri.015G118200 ID=Potri.015G118200.1.v4.1 annot-version=v4.1 ATGACCGTCCATCCAATCACCATGAAACCAAAGCCCCACAAAAGATCCAACAAAACCCGCTTCCAAAACCCACCACCACCACCACCACTAGCAGAAAATC CATCAGATTATGCCTTCAAAATAACAAAAACAGCAGTATCACAAATCTGCCAATCAGTAGGGTTTAAGTCCACACAACTCTCAGCTCTTGAAACGCTAAC CCATATAGCCACCCTTTACCTCCAAACACTAGCCAAAACAGCTGTGTCATATTCCAATGCATCCAACCGTACTCAATCAAACATCTTTGACATCATCAAC TCATTACATGACATGTCATCTGTACAAGGTTTCACAGGAGGATCCACGCTGCATTGTAGTAGTGGTGGCATTGGTCTTTTAAGGTCTGGTGTGTTTAAAG ATATTAAATCTTTTGTTGAGTTCAGTGATGAAATCCCTTTTGCCAAGCCTATTCCAAGAGGGAATTCGATTTCTTTGAGGAGGAATTCAATTCCTTTGGA AATAGATGAATTGGATTCCAGGGGTTTGCATATTCCTAGGTGGTTGCCAAGGTTTCCTGATGAGACTAGTTATAAGAATTGTGGGGACAGGTGGGAAAAA AGGAGGGAAGGGGGCTTGGCCTTGTGGGAGAATTCTGATTTGCTGAGTGGTGGAAGTGGAAATAAATCCCAGGGGATTTCCAGGGAGAATGAGAAAAGAA GTGATGGTGATGGTGATTTGTCGGTGGAGAGAGGAAAGGTGAGTTTTAAGATTGGGGAAGCAATGAAGGCACAAAAAGGAGGGATTTTAATTTCTTTTTT GTGA
AA sequence Show only first row Show all	>Potri.015G118200.1 pacid=42775074 polypeptide=Potri.015G118200.1.p locus=Potri.015G118200 ID=Potri.015G118200.1.v4.1 annot-version=v4.1 MTVHPITMKPKPHKRSNKTRFQNPPPPPPLAENPSDYAFKITKTAVSQICQSVGFKSTQLSALETLTHIATLYLQTLAKTAVSYSNASNRTQSNIFDIIN SLHDMSSVQGFTGGSTLHCSSGGIGLLRSGVFKDIKSFVEFSDEIPFAKPIPRGNSISLRRNSIPLEIDELDSRGLHIPRWLPRFPDETSYKNCGDRWEK RREGGLALWENSDLLSGGSGNKSQGISRENEKRSDGDGDLSVERGKVSFKIGEAMKAQKGGILISFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31240			Bromodomain transcription fact...		Potri.015G118200 [exp]	0	1
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.005G010900 [exp]	3.87	0.8008
AT5G07610			F-box family protein (.1)		Potri.008G016150 [exp]	6.16	0.8063
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.016G084100 [exp]	15.42	0.7831
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	18.97	0.7862
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	23.62	0.7723
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	24.81	0.7615	SDG935
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.012G014600 [exp]	27.74	0.7458
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	29.32	0.7493
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	29.79	0.7632	Pt-ATPDAT.2
					Potri.003G027116 [exp]	30.38	0.7632

Compare expression of checked genes

Potri.015G118200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.