Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10180 786 / 0 unknown protein AT5G49830 299 / 6e-90 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 293 / 6e-88 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120000 [exp] 1184 / 0 AT1G10180 809 / 0.0 unknown protein Potri.015G119300 [exp] 1031 / 0 AT1G10180 628 / 0.0 unknown protein Potri.008G009100 [exp] 298 / 1e-89 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 298 / 2e-89 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.010G249900 [exp] 293 / 1e-87 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.014G195400 [exp] 176 / 1e-45 AT1G10180 215 / 8e-59 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040609 [exp] 941 / 0 AT1G10180 854 / 0.0 unknown protein Lus10018297 [exp] 939 / 0 AT1G10180 858 / 0.0 unknown protein Lus10034843 [exp] 311 / 3e-94 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 302 / 5e-91 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 301 / 1e-90 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 285 / 8e-85 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 271 / 2e-79 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 224 / 8e-63 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10022896 [exp] 196 / 2e-52 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 174 / 2e-45 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF16528 [poplar] [flax] Exo84_C Exocyst component 84 C-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G118500.1 pacid=42775749 polypeptide=Potri.015G118500.1.p locus=Potri.015G118500 ID=Potri.015G118500.1.v4.1 annot-version=v4.1 ATGGAGAGCAGTGAAGAAGACGATGATTTCCCTTCTATAGAAAGCATTACTTCTCAGTCCAAGATCGACTCTTCGTACCAGTCTCACACAGAAAAGGGAA TCAGAAAAGTTTGTTGTGAACTCTTGGATTTGAAGGATGCTGTGGAGAATCTATGCGGCAATATGCAAACAAAGTACTTTGCTTTCTCGAGAATGTCTGA AGAAGTAGTGGAAATGGAGCATGAGTTGGTGGAATTGAGAAAGCATATTTCTGCACAAGGGATTCTTGTGCAGGATTTGATGACTGGGGTTTGCCGTGAA TTGGAAGAGTGGAACTCTGCTAATGGCAACATTGGTGATTGTCAGCAAGATCCTCAAGTTGATGAACTTCAAAGTTCCTTGCTAAGTGACGCAGATAATC GGAAAGCCATATTCTTGGAGAATATTGATGTTCTCTTGGCTGAACATAAAGTGGAAGAAGCAGTTGAAGCTTTGGAAGCTGAAGAGAAAAACTGTCCAGA GCTGAAAGGTTCTGGAGATACCTCATCAATGGAATTATCCTCATATAGATCAGCGTTTTTGAAGAGAAAGTCAATGCTCGAGGATCAACTGATTGAGATT ACTGAACAGCCTTTGGTTAGCATTCTGGAACTAAAGAAAGCTTTATCTGCTTTGATCAAGCTTGGGAAAGGTCCTTTGGCACATCAACTACTGCTAAAAT CATATGGTTCCCGCCTCCAAAAGAGTATTGAGCTTTTCCTTCCGTCATGTTCTGTGTATCCCAAAACATTTCCAGCTACACTATCCAGGCTTGTGTTTTC AATAATTTCTGTGACAACAAAAGAATCTGGTTTGATATTTGGTGATAATCCTGTATATACCAATAGGGTTGTTCAATGGGTGGAGTGGGAAATCGAATAC TTTGTACGGTTGGTGAAGGAGAATGCACCCTCTTCTGAAAAACTTTTTGCTTTGGGCACAGCTAGCAATTGTGTTCAGGCTAGTCTTACATACTCCTCAA TGCTGGAATCACAAGGTCTGAAACTGTCAAAGTTGCTTTTGGTGCTCTTACGACCATACATTGAAGAAGTGTTAGAGTTGAATTTTAGATGGGCCAGAAG GGCAGCTCTGGATGTGACAGAAATAGATGAGAGCTCGCTTTTGTCACCTAGATCTATGTCTCCATTATCTGCTTTTGCAACATTGTCAGATAGTGTGCTT GTTGATAGTGGAATGAAATTCATGGACATCATTGAAGATATATTGGCACAGCTAACGCCCATGGCTGTCTTGCATTTTGGAGCCAATGTATTAACAAGAA TTTCACAGCTGTTTGATAAATACATGGATATGCTAATTAAATCCCTGCCAGGTCCCTCTGATGATGACAATCTCACAGAGCTGAAGGAGGTTATACACTT CAGAGCTGAGACTGATTCGGAGCAGCTTGCACTTTTGGGATTTGCATTTACTATTCTGGATGAACTTTTACCCCTTGGCGTATTAAAAGTTTGGAGTCTA ACAAATGAAAGCAAGGAGCTGGAAAGTGAAAATATTGTGCCTAATGCGAGCATTACAGCAGAATTGAAGGAATGGAAGCGCAGCCTTCAGCATTCTTTTG ACAAGCTTAGAGATCACTTCTGTCGGCAATATGTTTTGACTTTCATCTATTCAAGACAAGGAAAAACACGATTAAATGCACTAATTTATTTAAGTGGGGA AGGGGCGGATTTGTATTGGGACTCTGATCCTCTTCCGTCATTGCCATTTCAGGCATTATTTTCAAAGCTTCAGCAATTAGCAACTGTGGCTGGAGACGTG TTACTTGGGAAAGAGAAAATACAGAAAATTTTGCTTGCTAGGCTAACAGAGACTGTTGTGATGTGGCTGTCTGAGGAGCAGGAATTCTGGGATGTGTTTG AGGATGAATCAGTTCCACTTAAGCCACTTGGTTTGCAGCAGTTAATTCTTGACATGCACTTCACTGTTGAAATTGCTCGTTTTGCTGGCTATCCATCTCG ACATGTGCATCAGATTGCTTCGGCCATAATTGCTCGAGCAATCAGGACTTTCTCAGCTAGAGGCATAGACCCACAAAGTGCACTACCTGAGGATGAATGG TTCGTTGAAACTGCAAGGACAGCCATCAACAAACTTTTGTTAGGAACGTCTGGGTCAGACGCATCTGAGATTGACGAGGACCATATTATCATACACGACG AGATGGTTTCAGACTCCGACGAGACTGCTTCTTCCCTTTCGTCAATAGAATCATTCAAGTCTTTTGCTTCTGCAAACATGGGTGAACTAGATAGTCCCGT GTATTTCACTGATCCCGAGGGTTGA
AA sequence Show only first row Show all	>Potri.015G118500.1 pacid=42775749 polypeptide=Potri.015G118500.1.p locus=Potri.015G118500 ID=Potri.015G118500.1.v4.1 annot-version=v4.1 MESSEEDDDFPSIESITSQSKIDSSYQSHTEKGIRKVCCELLDLKDAVENLCGNMQTKYFAFSRMSEEVVEMEHELVELRKHISAQGILVQDLMTGVCRE LEEWNSANGNIGDCQQDPQVDELQSSLLSDADNRKAIFLENIDVLLAEHKVEEAVEALEAEEKNCPELKGSGDTSSMELSSYRSAFLKRKSMLEDQLIEI TEQPLVSILELKKALSALIKLGKGPLAHQLLLKSYGSRLQKSIELFLPSCSVYPKTFPATLSRLVFSIISVTTKESGLIFGDNPVYTNRVVQWVEWEIEY FVRLVKENAPSSEKLFALGTASNCVQASLTYSSMLESQGLKLSKLLLVLLRPYIEEVLELNFRWARRAALDVTEIDESSLLSPRSMSPLSAFATLSDSVL VDSGMKFMDIIEDILAQLTPMAVLHFGANVLTRISQLFDKYMDMLIKSLPGPSDDDNLTELKEVIHFRAETDSEQLALLGFAFTILDELLPLGVLKVWSL TNESKELESENIVPNASITAELKEWKRSLQHSFDKLRDHFCRQYVLTFIYSRQGKTRLNALIYLSGEGADLYWDSDPLPSLPFQALFSKLQQLATVAGDV LLGKEKIQKILLARLTETVVMWLSEEQEFWDVFEDESVPLKPLGLQQLILDMHFTVEIARFAGYPSRHVHQIASAIIARAIRTFSARGIDPQSALPEDEW FVETARTAINKLLLGTSGSDASEIDEDHIIIHDEMVSDSDETASSLSSIESFKSFASANMGELDSPVYFTDPEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10180			unknown protein		Potri.015G118500 [exp]	0	1
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	2.44	0.8068
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Potri.019G082000 [exp]	8.00	0.7118	Pt-INV1.2
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	9.48	0.7189	GAL1.7
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.002G044800 [exp]	10.29	0.7463
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Potri.008G107600 [exp]	14.83	0.6819
AT5G09450			Tetratricopeptide repeat (TPR)...		Potri.017G048500 [exp]	15.65	0.7140
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.014G109100 [exp]	15.68	0.7305
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	20.39	0.6763
AT3G56870			unknown protein		Potri.014G181200 [exp]	22.97	0.7145
AT4G23490			Protein of unknown function (D...		Potri.001G100700 [exp]	23.08	0.6962

Compare expression of checked genes

Potri.015G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.