Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 161 / 7e-42 Ankyrin repeat family protein (.1) AT5G35810 138 / 1e-35 Ankyrin repeat family protein (.1) AT3G54070 138 / 3e-34 Ankyrin repeat family protein (.1) AT5G04700 128 / 1e-30 Ankyrin repeat family protein (.1) AT5G04690 127 / 2e-30 Ankyrin repeat family protein (.1) AT5G04730 122 / 8e-29 Ankyrin-repeat containing protein (.1) AT5G04680 110 / 5e-25 Ankyrin repeat family protein (.1) AT4G03480 59 / 6e-09 Ankyrin repeat family protein (.1) AT3G09550 59 / 8e-09 Ankyrin repeat family protein (.1) AT4G03450 56 / 1e-07 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G119800 [exp] 993 / 0 AT3G18670 141 / 2e-35 Ankyrin repeat family protein (.1) Potri.015G119401 [exp] 486 / 8e-161 AT5G04690 120 / 7e-28 Ankyrin repeat family protein (.1) Potri.014G057950 [exp] 357 / 6e-114 AT3G18670 176 / 2e-47 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 358 / 3e-113 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G019600 [exp] 307 / 1e-98 AT3G18670 137 / 4e-36 Ankyrin repeat family protein (.1) Potri.011G019200 [exp] 312 / 1e-95 AT3G18670 137 / 1e-33 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 305 / 9e-93 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 298 / 7e-91 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.006G281500 [exp] 295 / 8e-89 AT3G54070 110 / 8e-25 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038357 [exp] 174 / 1e-45 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10027721 [exp] 171 / 4e-45 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10014701 [exp] 164 / 1e-42 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10000489 [exp] 161 / 2e-42 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 157 / 5e-40 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10014030 [exp] 143 / 2e-35 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 143 / 3e-35 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10016672 [exp] 143 / 3e-35 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10035567 [exp] 123 / 1e-29 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 71 / 1e-14 ND 146 / 2e-42
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.015G118600.1 pacid=42775728 polypeptide=Potri.015G118600.1.p locus=Potri.015G118600 ID=Potri.015G118600.1.v4.1 annot-version=v4.1 ATGAAAAAAATAGAGAGGACATATAAAACTGTAGCCAAGGATGTCTACCTAGCAGCCTTGGAAGAAGACTGGGAGAGGATGATTTATGCTTGCAGTGGCA GCAGTGATATGTACGTGATGTCTCCAGTAACGGTTTCGGGAGATACTCCATTGCACCTGGCAGTGTATAGCAAAAAGGTTAAGCCGCTTCAAACTCTACT CGATATTGCCAAAAAACATTCATTGCTCGAGAAACCCCTTAAAAAAAAGAACGCGTATGGAAATACAGTTCTTCATGAAGCAGTTTTTGCTGGAAATATG GAAGCAGTAGAGCACTTACTCCAGGGTGAATATGATCCTTCAATGCAACTTCAGACTAAAAACGCGCTTGGGGAGACTCCATTTTATAGAGCTGCTGCAT GTGGTAAGAAAAAAATAGTGGAGCTTTTAGCTAGAAAAATGGGCCAAATCCCAGAGGGAACGCTATCAGAGGATCACCGCAAGAGAGAAGATTCAAAGCC GATTCTTCATGCTGCCATCCAAGGACACCATTTTGACACTGCTCTGACTTTGCTGAAACTGGATCCATCACTTTATAAAATGAAGGACGATCAGGGAATG ACCTGTCTTCATGTCCTTGCTGGGATGCCTAGTGCTTTCAAGAGTGGATATGCACTGCGCCAAATTACCATTACGAACTTGATCTACTGTTGCCTTTCCG CCGCAAAGGGTGATGGCGACCAGAGCCGTTGTAAAAAAGGATGGCCACTGGTGGAAATAATCCGGAAAGAAAAGCACAAGCATGAATCTGCGTTGGAACT TGCCAAGGAGCTTATAAAAAAGAACAAGCTTAAATGGTGGCAATCTATCACAGTGAAGCCTACCAAAGTTAATATCGAGACCCCTGGTCAAGGAGGAAGA GGAGGACAAAGTGAAAGACAAGGAGGGGGAGGAATCCCAGGAGGAGGACGCGAAGGACAAGACGGAGCACGAGAAGGAGTTGACACAGGAAAAGGAGGGG GAGGAGGAGAGGTAGAAAATAATGAAAATGGTCAACCAAAAATAGAAGAAAATAGAAGACAAGAGAAGCCTCCTTCACCTCCAAACCCGTTGTTTATAGC AACTAGTAATGGAATAGTAGAGATTGCTAAAGAGATACTTGCTAAATTTCCTCAGGGTATTGAGCTTGTTAATGATGAGGGGCAGAACATATTGCATGTG GCCGTGATGCATCGACGGCGGGAGATTTTCCGTCTTGTGAAGAAAAAGAACATAATAGTGACCAGGATGAGTACGAGCGTAGATAATAATGGCTTCACAT TGTTGCACCAAGTTGCACACGTGAAGCACTACAGCGGAGGAGCCAAGCCCGGCCCTGCTCTCCAGCTACAAGAAGAAATAAAATGGTTCAAGCGAGTGCA GAGGGTGGTTCCACCTTCTCTGTCCGAGCAGCGGGTACAGTGGGTGGTTCCGAATGACAAGAATTACAACTTCACTGCATTCGAGCTCTTCCAAGAGGAG CATAAAGGTCAACTCAAGTTGGCGCAAGATTGGATCGAGAAAACCTCTCAGTCATGCTCAGCAGTAGCCGTTCTTTTGGCCACCGTTGTCTTTGCTGCCG CTTACACTATACCTGGAGGTTCTGACGATCGTGGCTTTCCCATTTTCCTTCACAACCCTTTCTTCATAGCTTTCACTGTCTTGGATGTTACCGCCTTAGC GAGCTCCTTGACATCAGTTGTGATGTTCCTTTCTATCCTCACCACACCTTTTGAATGCGAGAAATTCTATCACAATATTCCTCGGAAACTGATATGGGGC TTTACTTTGCTCTTCTTCTCAGTGATGACAACCATGCTTGCTTTTACTTGCACTCTTCTTTTAATCATTCGCTTGAAGAAGCAATGGACCACAGGTCTGA TGTCCATGGCTGCTTTCCTTCCCGTGTCAGTATTTGCAGTGATGCAGTTCCCTTTATATGTCGCCTTTATGACTACTATGAAGGACTTCTATAAGGAAGT CGTGAAGTCTCTACCTTGGATCCACCTCCCTTTCCGCTCCCATTTCAGGCAAGGGAAGGCCAGAAGAAGATGA
AA sequence Show only first row Show all	>Potri.015G118600.1 pacid=42775728 polypeptide=Potri.015G118600.1.p locus=Potri.015G118600 ID=Potri.015G118600.1.v4.1 annot-version=v4.1 MKKIERTYKTVAKDVYLAALEEDWERMIYACSGSSDMYVMSPVTVSGDTPLHLAVYSKKVKPLQTLLDIAKKHSLLEKPLKKKNAYGNTVLHEAVFAGNM EAVEHLLQGEYDPSMQLQTKNALGETPFYRAAACGKKKIVELLARKMGQIPEGTLSEDHRKREDSKPILHAAIQGHHFDTALTLLKLDPSLYKMKDDQGM TCLHVLAGMPSAFKSGYALRQITITNLIYCCLSAAKGDGDQSRCKKGWPLVEIIRKEKHKHESALELAKELIKKNKLKWWQSITVKPTKVNIETPGQGGR GGQSERQGGGGIPGGGREGQDGAREGVDTGKGGGGGEVENNENGQPKIEENRRQEKPPSPPNPLFIATSNGIVEIAKEILAKFPQGIELVNDEGQNILHV AVMHRRREIFRLVKKKNIIVTRMSTSVDNNGFTLLHQVAHVKHYSGGAKPGPALQLQEEIKWFKRVQRVVPPSLSEQRVQWVVPNDKNYNFTAFELFQEE HKGQLKLAQDWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSDDRGFPIFLHNPFFIAFTVLDVTALASSLTSVVMFLSILTTPFECEKFYHNIPRKLIWG FTLLFFSVMTTMLAFTCTLLLIIRLKKQWTTGLMSMAAFLPVSVFAVMQFPLYVAFMTTMKDFYKEVVKSLPWIHLPFRSHFRQGKARRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	2.82	0.9724
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.007G066700 [exp]	3.00	0.9658
AT1G15780			unknown protein		Potri.001G033400 [exp]	4.69	0.9643
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	4.89	0.9643
AT4G31980			unknown protein		Potri.003G209832 [exp]	4.89	0.9803
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.005G047800 [exp]	6.00	0.9689
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041900 [exp]	11.95	0.9203
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142750 [exp]	13.96	0.9360
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	15.49	0.9544
					Potri.010G076350 [exp]	15.49	0.9510

Compare expression of checked genes

Potri.015G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.