Plant FIBer expression Database

Potri.015G118800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10155 86 / 4e-20 ATPP2-A10 phloem protein 2-A10 (.1)
AT1G31200 82 / 5e-19 ATPP2-A9 phloem protein 2-A9 (.1)
AT4G19840 49 / 2e-06 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G120000
[exp]
375 / 1e-132 AT1G10155 82 / 6e-19 phloem protein 2-A10 (.1)
Potri.015G118900
[exp]
234 / 4e-77 AT1G10155 103 / 5e-27 phloem protein 2-A10 (.1)
Potri.015G118850
[exp]
178 / 2e-56 AT1G31200 69 / 3e-15 phloem protein 2-A9 (.1)
Potri.015G119100
[exp]
157 / 3e-48 AT1G31200 66 / 4e-14 phloem protein 2-A9 (.1)
Potri.012G120280
[exp]
127 / 5e-36 AT1G10155 125 / 1e-36 phloem protein 2-A10 (.1)
Potri.012G120160
[exp]
122 / 2e-34 AT1G10155 120 / 1e-34 phloem protein 2-A10 (.1)
Potri.015G120100
[exp]
114 / 5e-31 AT1G10155 122 / 2e-35 phloem protein 2-A10 (.1)
Potri.015G120200
[exp]
110 / 1e-29 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1)
Potri.012G120340
[exp]
95 / 9e-24 AT1G10155 133 / 1e-39 phloem protein 2-A10 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040607
[exp]
105 / 4e-26 AT2G39440 164 / 8e-50 unknown protein
Lus10018300
[exp]
104 / 1e-25 AT2G39440 164 / 7e-50 unknown protein
Lus10018304
[exp]
47 / 1e-05 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1)
Lus10040602
[exp]
44 / 0.0001 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14299 PP2 Phloem protein 2
Representative CDS sequence
>Potri.015G118800.2 pacid=42774978 polypeptide=Potri.015G118800.2.p locus=Potri.015G118800 ID=Potri.015G118800.2.v4.1 annot-version=v4.1
ATGAGTTTTCGTTCCAAGAGTTCTAGACAAGGGGATTCCAAAGGCTCTAAAGAACCGCCTTCTAAGCATGTTTCAAAGGGTGCTGAAGGTACAGGATCAT
CGTTTCCCGACTTCTCCAAGATGAAAAATCTCTTCGGGAGAGGGTCTAAAGGCAGTAAGGCAAGTAGCGACTCTCAACAACCATCTTCAAATAATGAAAA
TCCAGAACCGGCCCTCTCACAGGCTGGTAAAACCATGTTTAAACCGAAGAATCTTAGCATCTTTTCGGAGGAAGAAAGTCAAGCTTGGACAACTTCTGAA
AGCTATAGGGACGATCCTGCAGAGCTGCTAGAGGTGTGTTGGCTTGATGTAACTGGTTCAATGACTGCTACCAAAGGGAAGGCGTATGAAATTAGCTTCA
TATTATCCATGAATGAAGAGAATTCCTTTGGCTGGGAAGATCCTGTTTATGTGATGGCAAGGATAGGAGAGGAGGGAGAGTATACGCGCGTAAAAATAGA
TCTATCCAAGTTAGGCCTGAAAGAAGAGGAATTTCCGGCGGAGAAGTGTCGGGTTGAGTTTAGAAGTGATGAAAACGCTGAAAATAATAAGAAAACACTC
TATTTTGGCTTGTATGAGGTGTGGACTAACCACTGGAAGGGTGGTCTACGGATCCATGAGGCCATTGTTCGGGAATTAACAGCTGAAGATTCTGCTTCTA
CATCTAATACCCGTTCGGACGACTCCAAAGTGCAAGAAGCAACAGCTGACAAGTCTACTTCAGCATCTGAAAACCCAACAGCGGACATGTCCATAGATAA
GCAAGTACGGCCAGCTCCTCCCAACGAGCTCAGAAAATAA
AA sequence
>Potri.015G118800.2 pacid=42774978 polypeptide=Potri.015G118800.2.p locus=Potri.015G118800 ID=Potri.015G118800.2.v4.1 annot-version=v4.1
MSFRSKSSRQGDSKGSKEPPSKHVSKGAEGTGSSFPDFSKMKNLFGRGSKGSKASSDSQQPSSNNENPEPALSQAGKTMFKPKNLSIFSEEESQAWTTSE
SYRDDPAELLEVCWLDVTGSMTATKGKAYEISFILSMNEENSFGWEDPVYVMARIGEEGEYTRVKIDLSKLGLKEEEFPAEKCRVEFRSDENAENNKKTL
YFGLYEVWTNHWKGGLRIHEAIVRELTAEDSASTSNTRSDDSKVQEATADKSTSASENPTADMSIDKQVRPAPPNELRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.015G118800
[exp]
0 1
AT1G66200 ATGSR2, GLN1;2 glutamine synthetase 1;2, glut... Potri.017G131100
[exp]
1.41 0.8850 Pt-CYTGS.5
AT4G01240 S-adenosyl-L-methionine-depend... Potri.002G165300
[exp]
2.00 0.8782
AT1G59970 Matrixin family protein (.1) Potri.008G027600
[exp]
3.16 0.8465
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.014G060500
[exp]
5.29 0.8478
AT5G06800 GARP myb-like HTH transcriptional r... Potri.016G047900
[exp]
6.00 0.8385
AT3G45290 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, S... Potri.003G002500
[exp]
6.92 0.8397
AT4G27300 S-locus lectin protein kinase ... Potri.011G125201
[exp]
8.36 0.8398
AT4G38380 MATE efflux family protein (.1... Potri.009G143400
[exp]
9.38 0.8129
AT4G35290 ATGLUR2, ATGLR3... GLUTAMATE RECEPTOR 3.2, glutam... Potri.009G168300
[exp]
10.95 0.8276 Pt-GLUR2.1
AT4G27290 S-locus lectin protein kinase ... Potri.011G125301
[exp]
11.83 0.8288

Potri.015G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.