Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10180 628 / 0 unknown protein AT5G49830 284 / 4e-86 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 283 / 5e-86 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118500 [exp] 1062 / 0 AT1G10180 788 / 0.0 unknown protein Potri.012G120000 [exp] 970 / 0 AT1G10180 809 / 0.0 unknown protein Potri.010G249900 [exp] 283 / 7e-86 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 282 / 2e-85 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 276 / 5e-83 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.014G195400 [exp] 151 / 3e-38 AT1G10180 215 / 8e-59 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040609 [exp] 750 / 0 AT1G10180 854 / 0.0 unknown protein Lus10018297 [exp] 750 / 0 AT1G10180 858 / 0.0 unknown protein Lus10034843 [exp] 295 / 5e-90 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 288 / 9e-88 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 287 / 3e-87 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 267 / 7e-80 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 254 / 6e-75 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 217 / 9e-62 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10022896 [exp] 177 / 5e-47 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 164 / 5e-43 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G119300.2 pacid=42776262 polypeptide=Potri.015G119300.2.p locus=Potri.015G119300 ID=Potri.015G119300.2.v4.1 annot-version=v4.1 ATGGAATTATCCTCATATAGATCAGCGTTTTTGAAGAGAAAGTCAATGCTCGAGGATCGACTGATTGAGATTACTGAACAGCCTTTGGTTAGCATTCTGG AACTAAAGAAAGCTTTATCTGCTTTGATCAAGCTTGGGAAAGGTCCTTTGGCACATCAACTACTGCTAAAATCATATGGTTCCCGCCTCCAAAAGAGTAT TGAGCTTTTCCTTCCGTCATGTTCTGTGTATCCCAAAACATTTCCAGCTACACTATCCAGGCTTGTGTTTTCAATAATTTCCGTGACAACAAAAGAATCT GGTTTCATATTTGATGATAATCCTGTATATAACAATAGGGTTGTTCAATGGGTGGAGTGGGAAATCGAATACTTTGTACGGTTGGTGAAGGAGAATGCAC CCTCTTCTGAAAAACTTTTTGCTTTGGGCACAGCTAGCAATTGTGTTCAGGCTAGTCTTACATACTCCTCAATGCTGGAATCACAAGGTCTGAAACTGTC AAAGTTGCTTTCGGTGCTCTTACGACCATACATTGAAGAAGTGTTAGAGTTGAATTTTAGATGGGCCAGAAGGGCAGCTCTGGATGTGACAGAAATAGAT GAGAGCTCGCTTTTGTCACCTCGATCTATGTCTCCATTATCTGCTTTTACAACATTGTCAGATAGTGTGCTTGTTGATAGTGGAATGAAATTCATGGACA TCATTGAAGATATATTGGCACAGCTAACGCCCATGGCTGTCTTGCATTTTGGAGCCAATGTATTAACAAGAATTTCACAGCTGTTTGATAAATACATGGA TATGCTAATTAAATCCCTGCCAGGTCCCTCTGATGATGACAATCTCACAGAGCTGAAGGAGGTTAGACACTTCAGAGCTGAGACTGATTCGGAGCAGCTT GCACTTTTGGGATTTGCATTTACTATTCTGGATGAACTTTTACCCCTTGCCGTAATAAAAGTTTGGAGTCTAACAAATGAAAGCAAGGAGCTGGAAAGTG AAAATATTGTGCCTAATGCGAGCATTACAGCAGAATTGAAGGAATGGAAGCGCAGCCTTCAGCATTCTTTTGACAAGCTTAGAGATCACTTCTGTCGGCA ATATGTTTTGACTTTCATCTATTCAAGACAAGGAAAAACACGATTAAATGCACTAATTTATTTAAGTGGGGAAGGGGCGGATTTGTATTGGGACTCTGAT CCTCTTTTGTCATTGCCATTTCAGGCATTATTTTCAAAGCTTCAGCAATTAGCAACTGTGGCTGGAGACGTGTTACTTGGGAAAGAGAAAATACAGAAAA TTTTGCTTGCTAGGCTAACAGAGACTGTTGTGATGTGGCTGTCTGAGGAGCAGGAATTCTGGGATGTGTTTGAGGATGAATCAGTTCCACTTAAGCCACT TGGTTTGCAGCAGTTAATTCTTGACATGCACTTCACTGTTGAAATTGCACGTTTTGCTGGCTATCCATCTCGACATGTGCATCAGATTGCTTCAGCCATA ATTGCTCGAGCAATCAGGACTTTCTCAGCTAGAGGCATAGACCCACAAAGTGCACTACCTGAGGATGAATGGTTCGTTGAAACTGCAAGGACAGCCATCA ACGAACTTTTGTTAGGAACGTCTGGGTCAGACACATCTGAGATTGACGAGGACCATGTTATCATACACGACGAGATGGTTTCAGACTCTGACGAGACTGC TTCTTCCCTTTCGTCAATAGAATCATTCAAGTCTTTTGCTTCTGCAAACATGGGTGAACTAGATAGTCCCGTGTATTTCACTGATCCCGAGGGTTGA
AA sequence Show only first row Show all	>Potri.015G119300.2 pacid=42776262 polypeptide=Potri.015G119300.2.p locus=Potri.015G119300 ID=Potri.015G119300.2.v4.1 annot-version=v4.1 MELSSYRSAFLKRKSMLEDRLIEITEQPLVSILELKKALSALIKLGKGPLAHQLLLKSYGSRLQKSIELFLPSCSVYPKTFPATLSRLVFSIISVTTKES GFIFDDNPVYNNRVVQWVEWEIEYFVRLVKENAPSSEKLFALGTASNCVQASLTYSSMLESQGLKLSKLLSVLLRPYIEEVLELNFRWARRAALDVTEID ESSLLSPRSMSPLSAFTTLSDSVLVDSGMKFMDIIEDILAQLTPMAVLHFGANVLTRISQLFDKYMDMLIKSLPGPSDDDNLTELKEVRHFRAETDSEQL ALLGFAFTILDELLPLAVIKVWSLTNESKELESENIVPNASITAELKEWKRSLQHSFDKLRDHFCRQYVLTFIYSRQGKTRLNALIYLSGEGADLYWDSD PLLSLPFQALFSKLQQLATVAGDVLLGKEKIQKILLARLTETVVMWLSEEQEFWDVFEDESVPLKPLGLQQLILDMHFTVEIARFAGYPSRHVHQIASAI IARAIRTFSARGIDPQSALPEDEWFVETARTAINELLLGTSGSDTSEIDEDHVIIHDEMVSDSDETASSLSSIESFKSFASANMGELDSPVYFTDPEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10180			unknown protein		Potri.015G119300 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	2.64	0.9163
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	2.82	0.9131
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	3.00	0.9054
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	5.91	0.8907	ATKEA4.2
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.002G172000 [exp]	6.92	0.8792
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	7.07	0.8944
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	7.21	0.8652
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	8.00	0.9032	ALDH22.1
AT4G38280			unknown protein		Potri.004G205200 [exp]	9.59	0.8673
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	11.22	0.8832	Pt-KUP10.1

Compare expression of checked genes

Potri.015G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.