Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04690 117 / 4e-27 Ankyrin repeat family protein (.1) AT3G18670 114 / 3e-26 Ankyrin repeat family protein (.1) AT5G35810 111 / 3e-26 Ankyrin repeat family protein (.1) AT5G04700 111 / 7e-25 Ankyrin repeat family protein (.1) AT3G54070 105 / 2e-23 Ankyrin repeat family protein (.1) AT5G04730 103 / 1e-22 Ankyrin-repeat containing protein (.1) AT5G04680 93 / 3e-19 Ankyrin repeat family protein (.1) AT1G03670 62 / 2e-09 ankyrin repeat family protein (.1) AT4G05040 58 / 3e-08 ankyrin repeat family protein (.1.2.3.4.5) AT3G09550 56 / 1e-07 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118600 [exp] 509 / 9e-170 AT3G18670 160 / 8e-42 Ankyrin repeat family protein (.1) Potri.015G119800 [exp] 354 / 2e-97 AT3G18670 141 / 2e-35 Ankyrin repeat family protein (.1) Potri.014G057950 [exp] 240 / 2e-68 AT3G18670 176 / 2e-47 Ankyrin repeat family protein (.1) Potri.011G015750 [exp] 216 / 3e-62 AT3G18670 144 / 1e-37 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 211 / 2e-57 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.006G281700 [exp] 208 / 2e-57 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.011G016200 [exp] 208 / 2e-57 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.011G015700 [exp] 206 / 2e-57 AT3G18670 147 / 3e-38 Ankyrin repeat family protein (.1) Potri.011G019600 [exp] 189 / 4e-53 AT3G18670 137 / 4e-36 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038357 [exp] 133 / 1e-31 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10027721 [exp] 124 / 4e-29 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10014701 [exp] 117 / 1e-26 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10019887 [exp] 114 / 1e-25 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10003282 [exp] 109 / 3e-24 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10000489 [exp] 105 / 3e-23 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10014030 [exp] 105 / 5e-23 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10014031 [exp] 81 / 5e-18 ND 146 / 2e-42 Lus10035567 [exp] 84 / 1e-16 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10016672 [exp] 79 / 1e-14 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13606 [poplar] [flax] Ank_3 Ankyrin repeat CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.015G119401.1 pacid=42775277 polypeptide=Potri.015G119401.1.p locus=Potri.015G119401 ID=Potri.015G119401.1.v4.1 annot-version=v4.1 ATGGGTACACCTCCATATTTGATGAAGAGAGTCTACGAAGCAGCCTCGAAAGGAGACTGGGATTCGATGAAAACAGCTTACAAAGGAACAGATGATAAGT ACATGATGTCTCCAATAACGGTTTTAAAAGATACTGCATTTCACTTGGCAGTGTATAGCAAAAAGGATGAACCGCTTCAAAGTCTACTTCGTATTGTTAG TGGAAACTCAATTCCCGGGAATCCCTGTACATTACAGAATGCGTATGGAAACACAGTTCTTCATGAAGCTGTTTTTACTGGAAATATGAAAGCTGTAGAG CTCTTACTCCAGTTTACCCCTAAAGAACAGTGTGAATATGATCCTTCAAAGCAACTTGAGACTAAAAACGAGCTTGGGGAGACTCCATTGTATAGAGCTG CTTCATGTGGTAAGAAAGAAATAGTGGAGTATTTAGTTATAAAAATGAAGCAAATCTACAAGGGAAAGCTATTAGAAGAGCACCGCAGGAGAGAAAAGTT AGATAAAGAAAAGAATAATAACTCCGAGAAAGTAGATTTAAAGCCGATTCTTCATGCTGCCATCGAAGGACAACACTTTGAAACTGCTCTGACGTTGCTG AAACGGGATCCATCACTTGATGATATGACGGACGAACAGGGCAGGACCTGTCTTCATCTCCTTGCTGAGATGCCTAGTGCTTTCAAGAGTGGACGTGCAA TGCTCAAATATTCCATTAGGAACCTGATATACTGTTGCCTTTCCGCATCAAATGGTGATGACGACCAGAGCAAGAGTAAAAAAGAAACTGAAGCTCTGAC GTTGCTCGAACGGGATCCATCACTTGATATGACGGAAGAACAGGGCAGGACCTGTCTTCATCTCCTTGCTGAGATGCCTAGTGCTTTCAAGAGTGGATAT GCAATGCTCAAATATTCCATTAGGAAGATATACTGTTGCCTTTCCGCATCAAATGGTGATGACGACCAGAGCAAGAGTAAAAAAGGCCATTCCGCCGCAA ATGGTGACCAGAGCAAGAGTAAAAAAGGATACAAAGTGCTAAATTTCAAAGTGGAGCTGCATGGCAATAATATCTCCGAAGAAATACAATATGGCGCTAA CTATATATCATATATAGACATATTTTTCATCTGCAAGCAAGTTGTCAATGATGACTTCAAAGAATTTCAAATTCGAGATGGACAAGACAATAAAGTTTTT GATGATGCTTCCACATTGAAGATGTTGTCTTTGCATGAACATCAAAATCAAATTGTCTTGGTCGTTGATACAGCTCCAAAAAGTAGACCTCAATACTACT CAAGTGAACCTCATAAAGGATGGCAGGCGGTAAAAATCAAGAAAGAAAAGGACAAGCATGAATCTGCATTGAAACTTGCCAAGGAGCTTATAGAAAAGAA CAAGCGTCATTGGTGGCAATCTATCAATGTAGCGGATTCTAACAGAGTTAATATCGAAACCCCTGGTAAAGGAGGAAGAGGACAAGGAGTAGACCCAAAC CCGTTGTTTATAGCAATTAGTAATGGAATAGAAGAGATTGCTAAAGAAATACTTGAAAAATTTCCTCAGGGTGTTGAGCTTGTTAATGAAACAGGACAGA ACATAATGCATGTAGCTGTGATGCATCGACAGCTGGAGATTTACAATTATGTAAAGAAAAAGTTCAAACCAATTATGGTCAGGCTGTGTTCGAGGATCGA TAATAATGGCTACACATTGTTACACCAAGTTGCACACATGAAGCACTACCGCGGAGGAACCAAGCCCAGCCCTGCACTCAAGCTACAAGAAGAAATACAA TGGTTCAAGCGGGTGCAGAGGGCGGTTCCACCTTATCTGTCCGAGAAGCGGGCACCGAGGGAGGATCCGCCTGACAATGAGCACAAAGTGACAGCACACA ATTTCTTCTTACAAATGGAGCTTGAAGATCATCTAAGGGTGGTGGTTCCGCCTGACAATGAGTACAAACTGACAGCACACAAGTTCTTACAAATGGAGCC TGAAGATCATCTAAGGGTGGTGGTTCTGCCTTATAAAGCAATGCAACGTGACAAGGACTGCAAATTGACTGCACTCGAGCTCTTCCAAGAGGAGCATAAA GCTCAACTCAAGTTGGCGCAAGAATGGATCGAGAAGACCTCTCAGTCATGCTCAGCAGTAGCCGTTCTTTTGGCCACCGTTGTCTTTGCTGCCGCTTACA CTATACCTGGAGGTTCTAACGATCTTGGCTTTCCCATTTTCCTTCACAACCGTTTCTTCTTAGCTTTCACTGTCTTGGATGTTATCGCCTTGGCTAGCTC CTTGACCTCTGTTGTGATGTTCCTTTCTATCCTCACCTCTCCTTTTGAATATGAGAACTTCTACCACAATATTCCTCGGAAACTGATATGGGGCTTCACT TTACTCTTCCTCTCAGTGATGACAACCATGCTTGCTTTTGCTTGCACCCTTTTTCTAATAATTCATTTCAGAAAGAAATGGACCACGGGTCTTATTTCGT TTGCTGCTTTCTTTCCAGTGACAGTATTTGCACTAATGCAGTTCCCTTTATATGTCTCATTTCTGAGCACTACGAAGGACCTCTTTAAGGAAGTCGGGAA GTACCTGCCTCGATATTGCTGCCCTTTTCGGTGCCAGCGTTGTAGGAAAATGAGGCGAATATTCTGTTTGGCTTACTAG
AA sequence Show only first row Show all	>Potri.015G119401.1 pacid=42775277 polypeptide=Potri.015G119401.1.p locus=Potri.015G119401 ID=Potri.015G119401.1.v4.1 annot-version=v4.1 MGTPPYLMKRVYEAASKGDWDSMKTAYKGTDDKYMMSPITVLKDTAFHLAVYSKKDEPLQSLLRIVSGNSIPGNPCTLQNAYGNTVLHEAVFTGNMKAVE LLLQFTPKEQCEYDPSKQLETKNELGETPLYRAASCGKKEIVEYLVIKMKQIYKGKLLEEHRRREKLDKEKNNNSEKVDLKPILHAAIEGQHFETALTLL KRDPSLDDMTDEQGRTCLHLLAEMPSAFKSGRAMLKYSIRNLIYCCLSASNGDDDQSKSKKETEALTLLERDPSLDMTEEQGRTCLHLLAEMPSAFKSGY AMLKYSIRKIYCCLSASNGDDDQSKSKKGHSAANGDQSKSKKGYKVLNFKVELHGNNISEEIQYGANYISYIDIFFICKQVVNDDFKEFQIRDGQDNKVF DDASTLKMLSLHEHQNQIVLVVDTAPKSRPQYYSSEPHKGWQAVKIKKEKDKHESALKLAKELIEKNKRHWWQSINVADSNRVNIETPGKGGRGQGVDPN PLFIAISNGIEEIAKEILEKFPQGVELVNETGQNIMHVAVMHRQLEIYNYVKKKFKPIMVRLCSRIDNNGYTLLHQVAHMKHYRGGTKPSPALKLQEEIQ WFKRVQRAVPPYLSEKRAPREDPPDNEHKVTAHNFFLQMELEDHLRVVVPPDNEYKLTAHKFLQMEPEDHLRVVVLPYKAMQRDKDCKLTALELFQEEHK AQLKLAQEWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSNDLGFPIFLHNRFFLAFTVLDVIALASSLTSVVMFLSILTSPFEYENFYHNIPRKLIWGFT LLFLSVMTTMLAFACTLFLIIHFRKKWTTGLISFAAFFPVTVFALMQFPLYVSFLSTTKDLFKEVGKYLPRYCCPFRCQRCRKMRRIFCLAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04690			Ankyrin repeat family protein ...		Potri.015G119401 [exp]	0	1
					Potri.001G075201 [exp]	1.00	0.8815
AT4G09970			unknown protein		Potri.013G102300 [exp]	1.41	0.8411
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.001G425675 [exp]	8.30	0.8149
AT1G32583			unknown protein		Potri.015G101000 [exp]	8.48	0.8069
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.010G102700 [exp]	15.49	0.8140
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.010G082200 [exp]	17.54	0.8034
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.002G257300 [exp]	19.49	0.7917
AT5G04980			DNAse I-like superfamily prote...		Potri.008G011000 [exp]	21.90	0.8028
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Potri.001G398800 [exp]	28.77	0.7504
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G104800 [exp]	32.52	0.7653

Compare expression of checked genes

Potri.015G119401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.